View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15494_high_2 (Length: 307)
Name: NF15494_high_2
Description: NF15494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15494_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 80 - 294
Target Start/End: Original strand, 44476167 - 44476373
Alignment:
| Q |
80 |
ttaattgctgtttgtttttaccagctaataactnnnnnnntaaacatatttctttataaaaaatgaatgatcaagttaaattaatatcttatttttaatt |
179 |
Q |
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| T |
44476167 |
ttaattgctgtttgtttttaccagctaataactaagaaa-taaacatatttctttataaaaaatgaatgatcaagttaaattaatatcttatttttaatt |
44476265 |
T |
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| Q |
180 |
atgagattaattaatatttgtctcttacactacacatatggacactaattttagttaattgcatagaactagaagaatatttttaatataacaaatttta |
279 |
Q |
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| T |
44476266 |
atgag----attaatatttgtctcttaaactacacatatggacactaattttagttaattgcatagaact---agaatatttttaatataacaaatttta |
44476358 |
T |
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| Q |
280 |
gtatcatctctgttc |
294 |
Q |
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| T |
44476359 |
gtatcatctctgttc |
44476373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 44471698 - 44471777
Alignment:
| Q |
199 |
gtctcttacactacacatatggacactaattttagttaattgcatagaactagaagaatatttttaatataacaaattttagtatc |
284 |
Q |
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| T |
44471698 |
gtctcttacactacatata--gagactaattttagttaattgcatagaactataata----ttttaatataacaaattctagtatc |
44471777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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