View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15494_high_3 (Length: 249)

Name: NF15494_high_3
Description: NF15494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15494_high_3
NF15494_high_3
[»] chr1 (2 HSPs)
chr1 (19-242)||(50004641-50004864)
chr1 (28-238)||(4951529-4951739)
[»] chr7 (3 HSPs)
chr7 (22-143)||(45980299-45980420)
chr7 (21-106)||(47038653-47038738)
chr7 (62-122)||(10026618-10026678)
[»] chr2 (2 HSPs)
chr2 (21-143)||(18665309-18665431)
chr2 (53-122)||(16567582-16567651)
[»] chr5 (3 HSPs)
chr5 (46-143)||(13039862-13039959)
chr5 (46-143)||(13109856-13109953)
chr5 (67-127)||(644908-644968)
[»] chr3 (1 HSPs)
chr3 (25-143)||(44763910-44764030)
[»] chr8 (1 HSPs)
chr8 (57-122)||(7548034-7548099)
[»] chr4 (1 HSPs)
chr4 (21-143)||(29539321-29539443)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 50004864 - 50004641
Alignment:
Q  19 cactcaattcatcgttcacgttctctcttctctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatc 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50004864 cactcaattcatcgttcacattctctcttctctccatccatcgacctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatc 50004765  T
Q  119 tgacgccaattctatcctacaatcaatttatgttgaaactgtttccttgactcctgccgttctttcaaccatggtgcgaaactccgtcgccgctgtttag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50004764 tgacgccaattctatcctacaatcaatttatgttgaaactgtttccttgactcctgccgttctttcaaccatggtacgaaactccgtcgccgctgtttag 50004665  T
Q  219 atccatgtttcatgatttcttttc 242  Q
    ||||||||||||||||||||||||    
T  50004664 atccatgtttcatgatttcttttc 50004641  T

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Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 4951529 - 4951739
Alignment:
Q  28 catcgttcacgttctctcttctctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgacgccaa 127  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||    
T  4951529 catcgttcacgttctcttttctctccatccatcaacctctacctcttcctccataacttttcaacgccatctcttctatttgttacggatctgatgtcaa 4951628  T
Q  128 ttctatcctacaatcaatttatgttgaaactgtttccttgactcctgccgttctttcaaccatggtgcgaaactccgtcgccgctgtttagatccatgtt 227  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  4951629 ttctatcctacaatcaattaatgttgaaattgtttccttcactcctgccgttctttcaaccatggtgcgaaactacgtcgcccccgtttagatccatgtt 4951728  T
Q  228 tcatgatttct 238  Q
    |||||||||||    
T  4951729 tcatgatttct 4951739  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 45980420 - 45980299
Alignment:
Q  22 tcaattcatcgttcacgttctctcttctctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctga 121  Q
    ||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||  ||||||| ||||||||||||| |||||| ||| ||  ||||||    
T  45980420 tcaattcatcgctcatgttctctctgctctccatccatcgacctctacctcttccttcataactattcaacgccatcttttctatttgtcacatatctga 45980321  T
Q  122 cgccaattctatcctacaatca 143  Q
    | ||||||| ||||||||||||    
T  45980320 ctccaattccatcctacaatca 45980299  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 47038653 - 47038738
Alignment:
Q  21 ctcaattcatcgttcacgttctctcttctctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctat 106  Q
    |||||||||||||||| ||| |||||  |||||||||||||| ||| ||||||||| |||||||| |||||| |||||||||||||    
T  47038653 ctcaattcatcgttcatgttttctctgatctccatccatcgacctcaacctcttcctccataactcttcaacaccatctcttctat 47038738  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 10026618 - 10026678
Alignment:
Q  62 atctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgac 122  Q
    ||||||||||||||| ||| || | |||| | ||||||||||||||||||| |||||||||    
T  10026618 atctctacctcttcctccacaaatcttcagcaccatctcttctatctgttatggatctgac 10026678  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 18665309 - 18665431
Alignment:
Q  21 ctcaattcatcgttcacgttctctcttctctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctg 120  Q
    |||||||||||||||| ||||| ||||||||||||| || || | ||||||||| | |||||||| |||||| ||||||||||||| ||| |  |||||     
T  18665309 ctcaattcatcgttcatgttctttcttctctccatcaattgaccactacctctttctccataactcttcaaccccatctcttctatttgtcagagatcta 18665408  T
Q  121 acgccaattctatcctacaatca 143  Q
    || ||||||||| ||||||||||    
T  18665409 accccaattctaccctacaatca 18665431  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 16567651 - 16567582
Alignment:
Q  53 catccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgac 122  Q
    |||||||||||||||||||||||| |||||| | |||| | ||||||||||||| ||||| |||||||||    
T  16567651 catccatcgatctctacctcttcctccataaatcttcagcaccatctcttctatatgttatggatctgac 16567582  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 13039862 - 13039959
Alignment:
Q  46 ttctctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgacgccaattctatcctacaatca 143  Q
    ||||||||||||||||| ||| ||||||||| |||||||| |||||  ||||||||||||| | | || ||||| || ||||||| | ||||||||||    
T  13039862 ttctctccatccatcgacctcaacctcttcctccataactcttcaagaccatctcttctatttatcacagatctaaccccaattcgaacctacaatca 13039959  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 13109856 - 13109953
Alignment:
Q  46 ttctctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgacgccaattctatcctacaatca 143  Q
    ||||| ||||||||||| ||| ||||||||| |||||||| |||||  ||||||||||||| | | || ||||| || ||||||| | ||||||||||    
T  13109856 ttctccccatccatcgacctcaacctcttcctccataactcttcaagaccatctcttctatttatcacagatctaaccccaattcgaacctacaatca 13109953  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 644908 - 644968
Alignment:
Q  67 tacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgacgccaa 127  Q
    |||||||||| ||  |||| |||||| || | |||||||||||||||||||||||| ||||    
T  644908 tacctcttcctcctgaactcttcaacaccgtttcttctatctgttacggatctgactccaa 644968  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 44764030 - 44763910
Alignment:
Q  25 attcatcgttcacgttctctcttc--tctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgac 122  Q
    |||||||||||| |||||||||    ||||||| |||||| ||||||||||||| |||||||| |||||| ||||||||||||| | | ||  |||| ||    
T  44764030 attcatcgttcatgttctctctctgatctccatgcatcgacctctacctcttcctccataactcttcaacaccatctcttctatttatcacaaatctaac 44763931  T
Q  123 gccaattctatcctacaatca 143  Q
     ||||||| | ||||||||||    
T  44763930 cccaattccaccctacaatca 44763910  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 7548034 - 7548099
Alignment:
Q  57 catcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgac 122  Q
    |||| ||||||||||||| | |||||| | |||| | ||||||||||||||||||| |||||||||    
T  7548034 catcaatctctacctctttctccataaatcttcagcaccatctcttctatctgttatggatctgac 7548099  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 29539321 - 29539443
Alignment:
Q  21 ctcaattcatcgttcacgttctctcttctctccatccatcgatctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctg 120  Q
    ||||||||||||||||  |||| | |   ||| ||||||| | ||||||||||||| |||||||| |||||| ||||||| ||||| ||| ||  ||||     
T  29539321 ctcaattcatcgttcatcttctttgtgacctctatccatcaacctctacctcttcctccataactcttcaacaccatctcatctatttgtcacatatcta 29539420  T
Q  121 acgccaattctatcctacaatca 143  Q
    ||  |||||| | ||||||||||    
T  29539421 acctcaattccaccctacaatca 29539443  T

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