View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15494_low_1 (Length: 684)

Name: NF15494_low_1
Description: NF15494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15494_low_1
NF15494_low_1
[»] chr7 (1 HSPs)
chr7 (11-667)||(35560659-35561315)


Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 11 - 667
Target Start/End: Original strand, 35560659 - 35561315
Alignment:
Q  11 cagagacttttattgaagaataattgttttttcttttcaggttggcctttgaaatttaataatgcaaggatcatcgtcatcattataaaattttgtcaaa 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35560659 cagagacttctattgaagaataattgttttttcttttcaggttggcctttgaaatttaataatgcaaggatcatcgtcatcattataaaattttgtcaaa 35560758  T
Q  111 ataaaaaca-tcatcatcaccatcatagaataatttttctttnnnnnnnnnnntcagagaataattttcttacttgataattagccaggtcacgtgtctg 209  Q
    ||||||||| ||||||||| ||||||||||||||||||||||           ||| |||||||||||||||||||| ||||||||||||||||||||||    
T  35560759 ataaaaacagtcatcatcatcatcatagaataatttttctttaaaaaaaaa--tcatagaataattttcttacttgagaattagccaggtcacgtgtctg 35560856  T
Q  210 caatgtggcacctatgtttttgtccgtgtaggagagaggttgggaagctgtaagagcgtggattaaaactgaattacacacacaatacactcacttattt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35560857 caatgtggcacctatgtttttgtccgtgtaggagagaggttgggaagctgtaagagcgtggattaaaactgaattacacacacaatacactcacttattt 35560956  T
Q  310 attaatttagggtttgtttactctttattataaacaaggttccttcttttactttcttaacaaactattttaaggtgaataaattatttaggttggaact 409  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35560957 attaatttagggtttgtttactctttattataaacaaggttctttcttttactttcttaacaaactattttaaggtgaataaattatttaggttcgaact 35561056  T
Q  410 caaaactctacctatattatatatgaaatatctcttgcaagtaaatgatgcgagggtaccgttacatag-aacttccacattccaagactttcctcccaa 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||    
T  35561057 caaaactctacctatattatatatgaaatatctcttgcaagtaaatgatgcgagggtaccgtcacatagaaacttccatattccaagacttccctcccaa 35561156  T
Q  509 aaataagaaattgtgatgtaatttgttggtctgacatagtctttccttggtttcacttttttaaaggaggaatggaaaagaagcctggtcaaaactattt 608  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35561157 aaataagaaattatgatgtaatttgttggtctgacatagtctttccatggtttcacttttttaaaggaggaatggaaaagaagcctggtcaaaactattt 35561256  T
Q  609 gggacataggttggaatagatcatcgtacatgatacaatagttgataatcatcgaaaat 667  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35561257 gggacataagttggaatagatcatcgtacatgatacaatagttgataatcatcgaaaat 35561315  T

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