View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_high_1 (Length: 685)
Name: NF15495_high_1
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 310 - 672
Target Start/End: Original strand, 4403032 - 4403394
Alignment:
| Q |
310 |
acctaaaattttccttcaagcctctaaacatgagtgttggcaaaaggctgtgaaaactgaacttgattcccttgctttgaacaatacatggtccattgtt |
409 |
Q |
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| T |
4403032 |
acctaaaagttttcttcaagcctctaaacatgagtgttggcaaaaggctatgaaaactgaacttgattcacttgctttgaacaatacatggtccattgtg |
4403131 |
T |
|
| Q |
410 |
gatcttcctacaggtaaaactcctattggttgtcgttgggtttacaaaatcaaacatcatgttaatggcactattgaacgttacaaggcacgacttgttg |
509 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
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| T |
4403132 |
gatcttcctacaagtaaaacttctattggttgtcgttgggtttagaaaatcaaacatcatgttgatggcactattgaacgttaaaagacacgacttgttg |
4403231 |
T |
|
| Q |
510 |
ccaaaggatttactaaattagaatgggtggactattttgagacatttagccctgttgctaaactcactactgttagagttctcttggcattggcagctgc |
609 |
Q |
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|||||||||||||| ||||||| || |||||||||||||||| ||||| || |||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
4403232 |
ccaaaggatttactcaattagaccggatggactattttgagacctttagtccggttggtcaactcactactgttagagttctcttggcattggcagctgc |
4403331 |
T |
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| Q |
610 |
gaaaggttggtttttagagcagctagatgctaataacgcctttttacatggcgatttgaatga |
672 |
Q |
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| T |
4403332 |
aaaaggttggtttttagagcatttagatgtcaataacacctttttacatggcgatttgaatga |
4403394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 306 - 627
Target Start/End: Original strand, 38824325 - 38824646
Alignment:
| Q |
306 |
ttgaacctaaaattttccttcaagcctctaaacatgagtgttggcaaaaggctgtgaaaactgaacttgattcccttgctttgaacaatacatggtccat |
405 |
Q |
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| T |
38824325 |
ttgaacccaaaacttttattcaagcctcaaaacatgaatgttggcagaatgctatgaaagcggagcttgatgctctttcattaaacaaaacctggactat |
38824424 |
T |
|
| Q |
406 |
tgttgatcttcctacaggtaaaactcctattggttgtcgttgggtttacaaaatcaaacatcatgttaatggcactattgaacgttacaaggcacgactt |
505 |
Q |
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||||||||||||| |||||||||| |||||||| ||||||||||| || | || ||| | |||| | ||||||| ||||| || ||||| || || ||| |
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| T |
38824425 |
tgttgatcttcctgcaggtaaaacccctattggatgtcgttgggtatataggattaaataccatgctgatggcaccattgagcgctacaaagctcgcctt |
38824524 |
T |
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| Q |
506 |
gttgccaaaggatttactaaattagaatgggtggactattttgagacatttagccctgttgctaaactcactactgttagagttctcttggcattggcag |
605 |
Q |
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| T |
38824525 |
gttgctaaaggcttcacacaaatggagggggtggattactttgaaacttttagccctgtggcgaaattaaccactgttagagttttacttgccttagctg |
38824624 |
T |
|
| Q |
606 |
ctgcgaaaggttggtttttaga |
627 |
Q |
| |
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|||| ||||| ||||||||||| |
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| T |
38824625 |
ctgccaaaggatggtttttaga |
38824646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 306 - 627
Target Start/End: Complemental strand, 17882999 - 17882678
Alignment:
| Q |
306 |
ttgaacctaaaattttccttcaagcctctaaacatgagtgttggcaaaaggctgtgaaaactgaacttgattcccttgctttgaacaatacatggtccat |
405 |
Q |
| |
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||||||| |||| ||| |||||||||| |||||||| |||||||| || ||| ||||| | || |||||| | ||| | || ||||| || ||| | || |
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| T |
17882999 |
ttgaacccaaaacttttattcaagcctcaaaacatgaatgttggcagaatgctatgaaagcggagcttgatgctctttcattaaacaaaacctggactat |
17882900 |
T |
|
| Q |
406 |
tgttgatcttcctacaggtaaaactcctattggttgtcgttgggtttacaaaatcaaacatcatgttaatggcactattgaacgttacaaggcacgactt |
505 |
Q |
| |
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||||||||||||| |||||||||| |||||||| ||||||||||| || | || ||| | |||| | ||||||| ||||| || ||||| || || ||| |
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| T |
17882899 |
tgttgatcttcctgcaggtaaaacccctattggatgtcgttgggtatataggattaaataccatgctgatggcaccattgagcgctacaaagctcgcctt |
17882800 |
T |
|
| Q |
506 |
gttgccaaaggatttactaaattagaatgggtggactattttgagacatttagccctgttgctaaactcactactgttagagttctcttggcattggcag |
605 |
Q |
| |
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||||| ||||| || ||| || | || ||||||| || ||||| || ||||||||||| || ||| | || |||||||||||| | | || || || | |
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| T |
17882799 |
gttgctaaaggcttcactcaaatggagggggtggattactttgaaacttttagccctgtggcgaaattaaccactgttagagttttacttgccttagctg |
17882700 |
T |
|
| Q |
606 |
ctgcgaaaggttggtttttaga |
627 |
Q |
| |
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|||| ||||| ||||||||||| |
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| T |
17882699 |
ctgccaaaggatggtttttaga |
17882678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 326 - 666
Target Start/End: Original strand, 6097015 - 6097355
Alignment:
| Q |
326 |
caagcctctaaacatgagtgttggcaaaaggctgtgaaaactgaacttgattcccttgctttgaacaatacatggtccattgttgatcttcctacaggta |
425 |
Q |
| |
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||||| ||||||||||| |||||||| || ||| |||| |||||||||| || | || ||||| ||||||||||||||||| |||||||||| |||| |
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| T |
6097015 |
caagcttctaaacatgattgttggcagaaagctatgaaggttgaacttgatgccttggccttgaataatacatggtccattgtcgatcttcctagtggta |
6097114 |
T |
|
| Q |
426 |
aaactcctattggttgtcgttgggtttacaaaatcaaacatcatgttaatggcactattgaacgttacaaggcacgacttgttgccaaaggatttactaa |
525 |
Q |
| |
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||||||| ||||| ||| ||||| || ||||| ||| |||| | | |||| | |||||| | ||||||| |||||||||||| || | || | |
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| T |
6097115 |
aaactcccattggctgtaagtgggtctataaaattaaatatcacgctgatggttccattgaaaggcacaaggccaaacttgttgccaagggctacaccca |
6097214 |
T |
|
| Q |
526 |
attagaatgggtggactattttgagacatttagccctgttgctaaactcactactgttagagttctcttggcattggcagctgcgaaaggttggttttta |
625 |
Q |
| |
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| ||| | || || |||||||| || || | ||||||||||||| | ||||| || ||||||||||| ||| | || || || |||| ||||||||| |
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| T |
6097215 |
gcttgaaggtgtcgattattttgaaactttcaaccctgttgctaaattgactacggtaagagttctcttagcacttgctgcagccaaagattggtttttg |
6097314 |
T |
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| Q |
626 |
gagcagctagatgctaataacgcctttttacatggcgattt |
666 |
Q |
| |
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|| || ||||||| || |||||||||||||| || ||||| |
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| T |
6097315 |
gaacaactagatgtgaacaacgcctttttacacggggattt |
6097355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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