View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_high_12 (Length: 370)
Name: NF15495_high_12
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 35092274 - 35091919
Alignment:
| Q |
1 |
agaaagaaaagagagagagttggattggttgagaatgagatattgataaaagagtaaaatgtgatcttgtgtgaaccatattggcatatgcttacgtgaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35092274 |
agaaagaaaaaagagagagttggattggttgagaatgagatattgataaaagagtaaaatgtgatcttgtgtgaaccatattggcatatgcttacgtgaa |
35092175 |
T |
|
| Q |
101 |
tctgccaatatttctgacccaatgaagcatgtgattcttactaagtggaatgcaaactcagattctactaacaaagtgattctcataaaacaaatatggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35092174 |
tctgccaatatttctgacccaatgaagcatgtgattcttactaagtggaatgcaaactcagattctactaacaaagtgattctcataaaacaaatatggt |
35092075 |
T |
|
| Q |
201 |
caacttggccatattgcacttacaaagaaaacaaatgattaataacattttgaatcacataaaaaagcttataactgtaacatatgctgctctaaatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35092074 |
caacttggccatattgcacttacaaagaaaacaaatgattaataacattttgaatcacataaaaaagcttataactgtaacatatgctgctctaaatttc |
35091975 |
T |
|
| Q |
301 |
agtggaagtgcttttatgagtcagccacatgagcaaatgacctggctgctaaagat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35091974 |
agtggaagtgcttttatgagtcagccacatgagcaaatgacctggctgctaaagat |
35091919 |
T |
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