View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_high_2 (Length: 605)
Name: NF15495_high_2
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 13 - 587
Target Start/End: Complemental strand, 10592560 - 10591974
Alignment:
| Q |
13 |
aatatcataaataacaaaa-tctaatctcaaatagcaccaacaaaataatcgtgaaaaatgaaactgattatttaatcatcaattgcaaaattttatttc |
111 |
Q |
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| T |
10592560 |
aatatcataaataacaaaaatctaatctcaaatagcaccaacaaaataattgtgaaaaatgaaactgattatttaatcatcaattgcaaaattttatttc |
10592461 |
T |
|
| Q |
112 |
aattcttgcaaatgttgtaattacattaccagctgtatttattccactcatgcaaatgtatacaaaatatgatgacagctttgtaaaccacactttggac |
211 |
Q |
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| T |
10592460 |
aattcttgcaaatgttgtaattacattaccagctgtatttattccactcatgcaaatgtatacaaaatatgatgacagctttgcaaaccacactttggac |
10592361 |
T |
|
| Q |
212 |
tatacttttatatattttaaaggtagataagcttgattaaaaagcttatacttaactactattcttgatttaagtaagctttcaataccaagtaagaata |
311 |
Q |
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| T |
10592360 |
tatacttttatatattttaaaggtcgataagcttgattaaaaagcttatacttaactactattcttgatttaagtaagttttcaataccaagtaagaata |
10592261 |
T |
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| Q |
312 |
ataaacaggctatatatacttcaactttcaattttcaaactgtactatagagaagtgaaacaagatattggagtttcctatttatatgcatgtgatgtga |
411 |
Q |
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| T |
10592260 |
ataaacaggctatagatacttcaactttcaattttcaaactgtactatagagaagtgaaacaagatattggagtttcctatttatatgcatgtgatgtga |
10592161 |
T |
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| Q |
412 |
taattaggtatatcagcataaaaagg-----------tcattgtgagaaaatagcaagttgctaaactagtaacatccaaatttaatagaaagatacttc |
500 |
Q |
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| T |
10592160 |
taattaggtatatgagcataaaaaggtcatatacaggtcattgtgagaaaatagcaagttgctaaactagtaacatccacatttaatagaaagatacttc |
10592061 |
T |
|
| Q |
501 |
aaatcaaaatatcaccaataatttacatcttcaaaattgtaccaacatagtacattttcttctgtctgactttgaactcaatctttt |
587 |
Q |
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| T |
10592060 |
aaatcaaaatatcaccaataatttacgtcttcaaaattgtaccaacatagtacattttcttctgtctgactttgaactcaatctttt |
10591974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 531 - 587
Target Start/End: Original strand, 10429939 - 10429995
Alignment:
| Q |
531 |
tcaaaattgtaccaacatagtacattttcttctgtctgactttgaactcaatctttt |
587 |
Q |
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| T |
10429939 |
tcaaaactgtactaacatagtattttgtcctctgtctgattttgaactcaatctttt |
10429995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 28110005 - 28109934
Alignment:
| Q |
201 |
acactttggactatacttttatatattttaaa-ggtagataagcttgattaaaaagcttatacttaactact |
271 |
Q |
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| T |
28110005 |
acactttggactatacttatttatattttaaaaggtagataagcatgattaaaaagcatatactcaactact |
28109934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 32312146 - 32312188
Alignment:
| Q |
200 |
cacactttggactatacttttatatattttaaaggtagataag |
242 |
Q |
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| T |
32312146 |
cacactttggactatacttgtttatattttcaaggtagataag |
32312188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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