View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_high_5 (Length: 499)
Name: NF15495_high_5
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 155 - 482
Target Start/End: Original strand, 39851499 - 39851825
Alignment:
| Q |
155 |
taggtttgctgatcggattcttatacgacttagtgttgcggatgcgaatgacttggttctggaaggcgactttgattttctcaatatcagagactcacga |
254 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
39851499 |
taggtttgctgatcggattcttataccacttagtgttgcggatgagaatgacttggttctggaagacggctttgattttctcaatatcagagactcacga |
39851598 |
T |
|
| Q |
255 |
ttcttgttcacttatcggggagttccatggcttcccgatgttacacatttgagtgagcgtgagtaaccttgttttctaatgtattataatgtatgtattt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39851599 |
ttcttgttcacttatcggggagttccatggcttcccgatgttacacttttgattgagcgtgagtaaccttgttttctaatgtattataatgtatgtattt |
39851698 |
T |
|
| Q |
355 |
tgatttaacatcaaaaaagttttgttgataaccaaactatggttcagatcggtgtctgtttatttaaatacactcttttatgcgcagcattttgttgggc |
454 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39851699 |
tgatttaacatcaaaaaagttttgttgataa-caaactatggttcagatcggtatctgtttatttaaatacactcttttatgcgcagcattttgttgggc |
39851797 |
T |
|
| Q |
455 |
tttgtgtgtctctcaattattgagagct |
482 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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| T |
39851798 |
ttggtgtgtctctcaattattgagagct |
39851825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 155 - 482
Target Start/End: Original strand, 39855495 - 39855821
Alignment:
| Q |
155 |
taggtttgctgatcggattcttatacgacttagtgttgcggatgcgaatgacttggttctggaaggcgactttgattttctcaatatcagagactcacga |
254 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
39855495 |
taggtttgctgatcggattcttataccacttagtgttgcggatgagaatgacttggttctggaagacggctttgattttctcaatatcagagactcacga |
39855594 |
T |
|
| Q |
255 |
ttcttgttcacttatcggggagttccatggcttcccgatgttacacatttgagtgagcgtgagtaaccttgttttctaatgtattataatgtatgtattt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39855595 |
ttcttgttcacttatcggggagttccatggcttcccgatgttacacttttgattgagcgtgagtaaccttgttttctaatgtattataatgtatgtattt |
39855694 |
T |
|
| Q |
355 |
tgatttaacatcaaaaaagttttgttgataaccaaactatggttcagatcggtgtctgtttatttaaatacactcttttatgcgcagcattttgttgggc |
454 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39855695 |
tgatttaacatcaaaaaagttttgttgataa-caaactatggttcagatcggtatctgtttatttaaatacactcttttatgcgcagcattttgttgggc |
39855793 |
T |
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| Q |
455 |
tttgtgtgtctctcaattattgagagct |
482 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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| T |
39855794 |
ttggtgtgtctctcaattattgagagct |
39855821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 155 - 482
Target Start/End: Original strand, 39860169 - 39860495
Alignment:
| Q |
155 |
taggtttgctgatcggattcttatacgacttagtgttgcggatgcgaatgacttggttctggaaggcgactttgattttctcaatatcagagactcacga |
254 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
39860169 |
taggtttgctgatcggattcttataccacttagtgttgcggatgagaatgacttggttctggaagacggctttgattttctcaatatcagagactcacga |
39860268 |
T |
|
| Q |
255 |
ttcttgttcacttatcggggagttccatggcttcccgatgttacacatttgagtgagcgtgagtaaccttgttttctaatgtattataatgtatgtattt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39860269 |
ttcttgttcacttatcggggagttccatggcttcccgatgttacacttttgattgagcgtgagtaaccttgttttctaatgtattataatgtatgtattt |
39860368 |
T |
|
| Q |
355 |
tgatttaacatcaaaaaagttttgttgataaccaaactatggttcagatcggtgtctgtttatttaaatacactcttttatgcgcagcattttgttgggc |
454 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39860369 |
tgatttaacatcaaaaaagttttgttgataa-caaactatggttcagatcggtatctgtttatttaaatacactcttttatgcgcagcattttgttgggc |
39860467 |
T |
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| Q |
455 |
tttgtgtgtctctcaattattgagagct |
482 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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| T |
39860468 |
ttggtgtgtctctcaattattgagagct |
39860495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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