View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_high_6 (Length: 498)
Name: NF15495_high_6
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 5 - 480
Target Start/End: Complemental strand, 45552885 - 45552423
Alignment:
| Q |
5 |
aggagcacagattcaatgattagaaaggaagttcaggcatcctctattgtagaaaaaatgatagagtctcatctcagatggtttgtagctcgtagatgca |
104 |
Q |
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| T |
45552885 |
aggatcacagattcaatgattagaaaggaagttcaggcatcctctattgtagaaaaaatgatag--tctcatctcagatggtttgtagctcgtagatgca |
45552788 |
T |
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| Q |
105 |
tgagtgaggattcagcttctcttcttaagttattttcttaatcattttaatctgtttgtaaaattgataatacatgttttaggattcagcttttcttctt |
204 |
Q |
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| T |
45552787 |
tgagtgaggattcagcttctcttcttaagttattttcttaatcattttaatctgtttgtaaaattgataatacatgttttaggattcagtttttcttctt |
45552688 |
T |
|
| Q |
205 |
aagttattattttaacgtatgaacagttgtttcaaatagtcagcattaatctaagtttttatctagttaatttatgaaaaaatgcagaaaggttggtgtc |
304 |
Q |
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| T |
45552687 |
aagttattattttaacgtatgaacagttgtttcaaatagtcagcattaatctaagtttttatctagttaatttatgaaaaaatgcagaaaggttggtgtc |
45552588 |
T |
|
| Q |
305 |
tactaagttaggagtcttgaaaagtaacattttctaacagcaacattatttggaaagtgacactaaattactgcaaattaagttcttctacttgaaaacg |
404 |
Q |
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| T |
45552587 |
tactaagttaggagtcttgaaaagtaacattttctaactgcaacattatttggaaagtgacactaaattacttcaaattaagttcttctacttgaaaacg |
45552488 |
T |
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| Q |
405 |
gctctgtggccttaccataccattttggcacaattaataacaagttctaatgtcgactcacacccttaattattcg |
480 |
Q |
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| T |
45552487 |
gctctgtggccttaacatacca-tttggc----------acaagttctaatgtcgactcacacccttaattattcg |
45552423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 45547504 - 45547455
Alignment:
| Q |
143 |
taatcattttaatctgtttgtaaaattgataatacatgttttaggattca |
192 |
Q |
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||||||| ||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
45547504 |
taatcatcttaatttgtttgtaaaattgataatgcatgttttaggattca |
45547455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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