View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15495_high_7 (Length: 409)

Name: NF15495_high_7
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15495_high_7
NF15495_high_7
[»] chr5 (19 HSPs)
chr5 (13-392)||(12504355-12504732)
chr5 (53-148)||(25545211-25545304)
chr5 (57-114)||(27195277-27195334)
chr5 (53-121)||(36945658-36945726)
chr5 (53-116)||(3907677-3907740)
chr5 (53-151)||(41169443-41169541)
chr5 (13-49)||(5877456-5877492)
chr5 (13-49)||(22315066-22315102)
chr5 (13-49)||(22361191-22361227)
chr5 (13-49)||(29413615-29413651)
chr5 (53-136)||(40530026-40530107)
chr5 (53-151)||(42420070-42420168)
chr5 (49-114)||(31273062-31273127)
chr5 (57-130)||(40773132-40773205)
chr5 (62-134)||(32493314-32493386)
chr5 (13-49)||(42152057-42152093)
chr5 (13-50)||(12917988-12918025)
chr5 (79-136)||(43461964-43462021)
chr5 (72-132)||(35312015-35312074)
[»] chr4 (12 HSPs)
chr4 (53-153)||(21433859-21433959)
chr4 (53-152)||(2247567-2247665)
chr4 (13-50)||(30210522-30210559)
chr4 (13-49)||(7781565-7781601)
chr4 (52-87)||(2324810-2324845)
chr4 (72-151)||(41840581-41840660)
chr4 (49-136)||(52374966-52375053)
chr4 (57-151)||(15134624-15134718)
chr4 (73-151)||(32286304-32286382)
chr4 (79-136)||(16457923-16457980)
chr4 (79-136)||(33414006-33414063)
chr4 (79-151)||(21433952-21434024)
[»] chr3 (14 HSPs)
chr3 (54-121)||(45332562-45332629)
chr3 (53-151)||(37189197-37189295)
chr3 (53-151)||(14345139-14345237)
chr3 (53-151)||(36480695-36480793)
chr3 (53-110)||(40763397-40763454)
chr3 (13-49)||(32747607-32747643)
chr3 (53-121)||(40554091-40554159)
chr3 (54-121)||(31205423-31205490)
chr3 (54-132)||(35357324-35357402)
chr3 (53-136)||(19560682-19560765)
chr3 (50-144)||(48543377-48543471)
chr3 (79-136)||(11532514-11532571)
chr3 (72-145)||(33244683-33244756)
chr3 (53-110)||(37341276-37341333)
[»] chr2 (24 HSPs)
chr2 (57-148)||(1469730-1469821)
chr2 (53-136)||(25666801-25666884)
chr2 (54-110)||(9430191-9430247)
chr2 (77-121)||(16209393-16209437)
chr2 (13-49)||(16816285-16816321)
chr2 (13-49)||(16855442-16855478)
chr2 (13-49)||(21066874-21066910)
chr2 (13-49)||(21340887-21340923)
chr2 (53-109)||(42094233-42094289)
chr2 (52-110)||(12779530-12779588)
chr2 (53-110)||(4237279-4237336)
chr2 (79-151)||(12703460-12703532)
chr2 (73-121)||(41496077-41496125)
chr2 (53-121)||(44247591-44247659)
chr2 (57-116)||(3466410-3466469)
chr2 (53-136)||(42251216-42251299)
chr2 (54-136)||(42029396-42029478)
chr2 (78-136)||(44247541-44247599)
chr2 (13-50)||(2020393-2020430)
chr2 (53-110)||(15194564-15194621)
chr2 (53-106)||(16209428-16209481)
chr2 (53-126)||(17383773-17383846)
chr2 (79-136)||(18719734-18719791)
chr2 (53-121)||(18719784-18719851)
[»] chr6 (11 HSPs)
chr6 (79-151)||(1473603-1473675)
chr6 (47-134)||(4032992-4033079)
chr6 (53-136)||(24783919-24784002)
chr6 (53-136)||(6643318-6643401)
chr6 (50-151)||(479791-479891)
chr6 (50-151)||(4787767-4787868)
chr6 (53-110)||(7693670-7693727)
chr6 (53-116)||(12731577-12731640)
chr6 (56-136)||(4494397-4494477)
chr6 (94-151)||(4033086-4033143)
chr6 (53-89)||(26328211-26328247)
[»] chr1 (21 HSPs)
chr1 (53-116)||(23317962-23318025)
chr1 (53-136)||(2542705-2542788)
chr1 (53-136)||(31970123-31970206)
chr1 (49-148)||(27666984-27667083)
chr1 (53-136)||(49822581-49822664)
chr1 (50-136)||(40668979-40669065)
chr1 (53-135)||(45563119-45563201)
chr1 (53-110)||(731359-731416)
chr1 (13-49)||(23761310-23761346)
chr1 (13-49)||(26622699-26622735)
chr1 (13-49)||(32798952-32798988)
chr1 (13-49)||(41304477-41304513)
chr1 (53-151)||(34437651-34437748)
chr1 (53-102)||(18075217-18075266)
chr1 (53-114)||(38663704-38663765)
chr1 (13-49)||(1175831-1175867)
chr1 (50-114)||(45925133-45925197)
chr1 (72-114)||(32543766-32543808)
chr1 (53-106)||(7444334-7444387)
chr1 (53-110)||(45215380-45215437)
chr1 (56-132)||(49403528-49403604)
[»] chr7 (23 HSPs)
chr7 (53-136)||(2276280-2276363)
chr7 (78-129)||(2276355-2276406)
chr7 (50-115)||(7526142-7526207)
chr7 (13-50)||(15953717-15953754)
chr7 (13-50)||(19091022-19091059)
chr7 (13-49)||(1947791-1947827)
chr7 (53-121)||(12275756-12275824)
chr7 (13-49)||(33849658-33849694)
chr7 (57-109)||(316389-316441)
chr7 (13-49)||(15925392-15925428)
chr7 (53-129)||(26862923-26862999)
chr7 (79-151)||(26862992-26863064)
chr7 (55-110)||(33597015-33597068)
chr7 (55-110)||(10056652-10056707)
chr7 (49-116)||(36992872-36992939)
chr7 (91-129)||(46074146-46074184)
chr7 (53-106)||(640932-640985)
chr7 (62-151)||(3235547-3235636)
chr7 (53-114)||(18802893-18802954)
chr7 (71-152)||(40803214-40803295)
chr7 (53-114)||(45200503-45200564)
chr7 (53-106)||(48497688-48497741)
chr7 (56-116)||(32097478-32097538)
[»] chr8 (10 HSPs)
chr8 (71-152)||(36914877-36914958)
chr8 (53-132)||(34504384-34504463)
chr8 (53-151)||(17893305-17893403)
chr8 (53-110)||(40175923-40175980)
chr8 (50-110)||(38835050-38835110)
chr8 (53-151)||(4994208-4994304)
chr8 (52-116)||(2288651-2288715)
chr8 (50-110)||(21124979-21125039)
chr8 (50-87)||(27072865-27072902)
chr8 (57-129)||(2171056-2171128)
[»] scaffold0513 (1 HSPs)
scaffold0513 (13-49)||(11092-11128)
[»] scaffold0510 (1 HSPs)
scaffold0510 (13-49)||(7838-7874)
[»] scaffold0053 (2 HSPs)
scaffold0053 (13-49)||(66007-66043)
scaffold0053 (13-49)||(71676-71712)
[»] scaffold0137 (1 HSPs)
scaffold0137 (53-136)||(8234-8316)
[»] scaffold0060 (1 HSPs)
scaffold0060 (13-45)||(16319-16351)
[»] scaffold0003 (1 HSPs)
scaffold0003 (56-116)||(136344-136404)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 12504732 - 12504355
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatcatctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaatta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  12504732 aatatatcatgaatttaacacttcctagcacttatcatctcaccaaattatgttggtcccatataaatttgttggaattcatgtgaattttaatcaatta 12504633  T
Q  113 aagatagtgcgttaaaaaatgtgtattgaaatgtgtgtttgtaactttttctctttttactaaaggtaaaaatatgtatttttgcttataattaactgta 212  Q
    | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  12504632 atgatagtgcgttgaaaaatatgtattgaaatgtgtgtttgtaactttttctctttttactaaaggtaaaaatat--atttttgcttataattaactgta 12504535  T
Q  213 atggaaatagtactacttagaaaataagaataattgagaaagaggatattccaaaatctaattgtggatgcacatgatgtctaagtctccaacaactaac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12504534 atggaaatagtactacttagaaaataagaataattgagaaagaggatattccaaaatctaattgtggatgcacatgatgtctaagtctccaacaactaac 12504435  T
Q  313 aaagtctactgtgattattagatttggaggtgtgaatttatagtgatgttaagtgggtcaaacgaatttaagtttcattg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12504434 aaagtctactgtgattattagatttggaggtgtgaatttatagtgatgttaagtgggtcaaacgaatttaagtttcattg 12504355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 25545304 - 25545211
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgt 148  Q
    ||||||||||||| |||||||||||||||| ||||   |||||||||||||||||||| ||||  |||| ||| |||||||||| || ||||||||    
T  25545304 caccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattttaaccaatcaaag--agtgtgttgaaaaatgtgtgttaaaatgtgt 25545211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 27195334 - 27195277
Alignment:
Q  57 aaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaa 114  Q
    ||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||    
T  27195334 aaatcatgtcggacccatataaatttggtggaatccatgtgaattttaatcaattaaa 27195277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 36945658 - 36945726
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    ||||||||||| | |||| ||||||||||||||||| ||||||||||| ||||||||| ||||| ||||    
T  36945658 caccaaatcatataggtctcatataaatttggtggatttcatgtgaatattaaccaatcaaagaaagtg 36945726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 3907740 - 3907677
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaaga 116  Q
    ||||||||||||| |||||||||||||||||||||    ||||||||||||||||||| |||||    
T  3907740 caccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaatcaaaga 3907677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 41169443 - 41169541
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||   |||||||||||||||||||||   |||||||||||||||  || ||||| |||| ||| |||||||||| || |||| ||||||    
T  41169443 caccaaatcatgcgagtcccatataaatttggtggatcacatgtgaattttaacggatcaaagagagtgtgttgaaaaatgtgtgttaaaatatgtgtt 41169541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 5877456 - 5877492
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  5877456 aatatatcatgaatttaacacttcctagcacttatca 5877492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 22315066 - 22315102
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  22315066 aatatatcatgaatttaacacttcctagcacttatca 22315102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 22361191 - 22361227
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  22361191 aatatatcatgaatttaacacttcctagcacttatca 22361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 29413651 - 29413615
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  29413651 aatatatcatgaatttaacacttcctagcacttatca 29413615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 40530026 - 40530107
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||| ||||  |||||||||| |||||  || ||||||||||||| ||||||||  |||| ||||||||||||||    
T  40530026 caccaaatcatgtgggtctaatataaatttagtggatctcctgtgaattttaacaaattaaag--agtgtgttaaaaaatgtgt 40530107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 42420070 - 42420168
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||| | ||||||||||||||| ||||  |||||||| ||||||||||| ||| | |||| ||| ||||  |||| ||  ||||||||||    
T  42420070 caccaaatcatgtggatcccatataaatttgatggatctcatgtgagttttaaccaatcaaatagagtgtgttgaaaagcgtgttttagaatgtgtgtt 42420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 31273127 - 31273062
Alignment:
Q  49 atctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaa 114  Q
    |||| |||||||||||| | | | ||||||||||||||||  ||||||||||||||||| ||||||    
T  31273127 atcttaccaaatcatgtggattctatataaatttggtggatctcatgtgaattttaaccgattaaa 31273062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 40773205 - 40773132
Alignment:
Q  57 aaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaa 130  Q
    |||| |||| ||||||||||| ||||||||||  ||||||||||||| |||||| ||| |||||| ||| ||||    
T  40773205 aaatgatgtaggtcccatatatatttggtggatctcatgtgaattttgaccaataaaaaatagtgtgttgaaaa 40773132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 32493386 - 32493314
Alignment:
Q  62 atgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgt 134  Q
    |||| |||||||||||||||| || | || ||| ||||||||||||||| ||||| || |||||| |||||||    
T  32493386 atgtgggtcccatataaatttagtaggatccatatgaattttaaccaataaaagaaagcgcgttataaaatgt 32493314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 42152057 - 42152093
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    ||||||||||||||||||||||||||| |||||||||    
T  42152057 aatatatcatgaatttaacacttcctaacacttatca 42152093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 12918025 - 12917988
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatcat 50  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  12918025 aatacatcatgaatttaacactttctagcacttatcat 12917988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 43462021 - 43461964
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||| || |||||||||||||| |||||| | |||| |||| |||||||||    
T  43462021 atttggtggaactcgtgtgaattttaaccgattaaaaagagtgtgttagaaaatgtgt 43461964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 35312015 - 35312074
Alignment:
Q  72 catataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaat 132  Q
    |||||||||||| | |||||||||| ||| | |||||||||||||||||| ||| ||||||    
T  35312015 catataaatttgatagaattcatgtaaatat-aaccaattaaagatagtgtgttgaaaaat 35312074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 21433959 - 21433859
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgttt 152  Q
    ||||||||||||| |||| ||||||||||||||||   |||||||||||||||||||| ||||| |||| ||| |||||||||| || ||||||||||||    
T  21433959 caccaaatcatgtgggtctcatataaatttggtgggtctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgtgttt 21433860  T
Q  153 g 153  Q
    |    
T  21433859 g 21433859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 2247665 - 2247567
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgttt 152  Q
    ||||||||||||| |||| |||||||||||| ||||  || |||||||||||| |||||||||| |||| ||| |||| ||||| || |||| |||||||    
T  2247665 caccaaatcatgtgggtcgcatataaatttg-tggatctcgtgtgaattttaatcaattaaagagagtgtgttgaaaagtgtgtgttaaaatatgtgttt 2247567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 30210559 - 30210522
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatcat 50  Q
    |||||||||||||||||||||||| |||||||||||||    
T  30210559 aatatatcatgaatttaacacttcgtagcacttatcat 30210522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 7781565 - 7781601
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    ||||||||||||||||||| |||||||||||||||||    
T  7781565 aatatatcatgaatttaacccttcctagcacttatca 7781601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 2324810 - 2324845
Alignment:
Q  52 tcaccaaatcatgttggtcccatataaatttggtgg 87  Q
    |||||||||||||| |||||||||||||||||||||    
T  2324810 tcaccaaatcatgtgggtcccatataaatttggtgg 2324845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 41840660 - 41840581
Alignment:
Q  72 catataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||||||||  ||||| |||||||| |||| ||||| |||| ||| |||||| ||| || |||||| ||||    
T  41840660 catataaatttggtggaacccatgtaaattttaatcaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtatgtt 41840581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 52374966 - 52375053
Alignment:
Q  49 atctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    |||||||||||| |||| |||||| |||||||||| ||||    |||||||||||||||||| ||| | ||||  || ||||||||||    
T  52374966 atctcaccaaattatgtgggtcccgtataaatttgatggatcaaatgtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgt 52375053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 15134624 - 15134718
Alignment:
Q  57 aaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||| | ||||||||||||||||||||     ||||||||||||||||||| | ||| |||| ||| |||| ||||  || |||||||||||    
T  15134624 aaatcatttgggtcccatataaatttggtgagtcccatgtgaattttaaccaatcacagacagtgtgttgaaaagtgtgcgttaaaatgtgtgtt 15134718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 32286304 - 32286382
Alignment:
Q  73 atataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||| | || ||||||||||||||||||| ||| | |||| ||| |||||| | | |||||| |||||||    
T  32286304 atataaatttggttggatccatgtgaattttaaccaataaaaaagagtgtgttgaaaaatatatgttgaaacgtgtgtt 32286382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 16457980 - 16457923
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||| ||| || ||||||||||||||||||| ||||| |||| |||| |||||||||    
T  16457980 atttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttagaaaatgtgt 16457923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 33414063 - 33414006
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||| || ||||||||||||||||||| ||||| |||| ||| |||| |||||    
T  33414063 atttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 33414006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 21433952 - 21434024
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||| || ||||||||||||||||||| || || |||| ||| |||| ||| | || |||||||||||    
T  21433952 atttggtgggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgtgtt 21434024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 45332629 - 45332562
Alignment:
Q  54 accaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    |||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||    
T  45332629 accaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaagaaagtg 45332562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 37189197 - 37189295
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    |||||||||||||  | ||| |||| |||| ||||||||||||||||||||||||||| ||||| |||  |||||||||||| |||| |||||||||||    
T  37189197 caccaaatcatgtgagacccgtatagatttagtggaattcatgtgaattttaaccaatcaaagagagtctgttaaaaaatgtatattaaaatgtgtgtt 37189295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 14345237 - 14345139
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||| |||||||||||||||||||||   ||||||| |||||||||||| ||||| |||| ||| |||||| ||| || |||| ||||||    
T  14345237 caccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaatcaaagaaagtgtgttgaaaaatatgtgttaaaatatgtgtt 14345139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 36480793 - 36480695
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||| ||||||||||||||||| |||    ||||||||||||||||||| ||||| |||| |||  |||  |||| || |||||||||||    
T  36480793 caccaaatcatgtgggtcccatataaatttgttgggtcccatgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgtgtt 36480695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 40763454 - 40763397
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    ||||||||||||| | ||||||||||||||| ||||  ||||||||||||||||||||    
T  40763454 caccaaatcatgtggatcccatataaatttgatggatctcatgtgaattttaaccaat 40763397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 32747607 - 32747643
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  32747607 aatatatcatgaatttaacacttcctagcacttatca 32747643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 40554091 - 40554159
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    |||||||||||||  | |||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||    
T  40554091 caccaaatcatgtgagacccatataaatttgatggaactcatgtgagttttaaccaatcaaagagagtg 40554159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 31205423 - 31205490
Alignment:
Q  54 accaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    |||||||||||| ||||||||||||| |||||||   ||||||||||||| |||||| ||||| ||||    
T  31205423 accaaatcatgtgggtcccatataaaattggtgggtctcatgtgaattttgaccaatcaaagagagtg 31205490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 35357402 - 35357324
Alignment:
Q  54 accaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaat 132  Q
    ||||||||||||  ||||||||||||||||||||    ||||||| ||||||||||| ||||| |||| ||| ||||||    
T  35357402 accaaatcatgtaagtcccatataaatttggtggttcacatgtgagttttaaccaatcaaagagagtgtgttgaaaaat 35357324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 19560682 - 19560765
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||| ||||||||| |||||| |||||   | ||||  ||||||||||| ||||| |||| ||| ||||||||||    
T  19560682 caccaaatcatgtgggtcccatacaaatttagtggatcccttgtgctttttaaccaatcaaagagagtgtgttgaaaaatgtgt 19560765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 48543471 - 48543377
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaat 144  Q
    ||||| ||||||| || | ||||||||||||||  |||    ||||| |||||||| |||||||||| | ||||||||||| |||||||| ||||    
T  48543471 tctcatcaaatcacgtggatcccatataaatttaatgggtcccatgtaaattttaatcaattaaagaaaatgcgttaaaaagtgtgtattaaaat 48543377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 11532514 - 11532571
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    |||||||||||  ||||||||||||||||||| ||||| |||| |||| ||| |||||    
T  11532514 atttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgt 11532571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 33244756 - 33244683
Alignment:
Q  72 catataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatg 145  Q
    |||||||||||||||  | |||| ||||||||||||||| ||| ||| || ||| |||||| |||||| |||||    
T  33244756 catataaatttggtgagactcatttgaattttaaccaataaaaaataatgtgttgaaaaatatgtattaaaatg 33244683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 37341276 - 37341333
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    ||||||||||||| |||| |||||||||||  |||  | |||||||||||||||||||    
T  37341276 caccaaatcatgtgggtctcatataaatttaatgggttacatgtgaattttaaccaat 37341333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 1469821 - 1469730
Alignment:
Q  57 aaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgt 148  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| | |||| ||| |||||| ||| || ||||||||    
T  1469821 aaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgttaaaatgtgt 1469730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 25666884 - 25666801
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||| ||| |||||||||||||||||   ||||||||||||||| |||| ||| | |||| ||| ||||||||||    
T  25666884 caccaaatcatgtaggttccatataaatttggtgggtctcatgtgaattttaatcaatcaaatagagtgtgttgaaaaatgtgt 25666801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 9430191 - 9430247
Alignment:
Q  54 accaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    |||||||||||| ||||||||| ||||||| |||  |||||||||||||||||||||    
T  9430191 accaaatcatgtgggtcccatacaaatttgatggggttcatgtgaattttaaccaat 9430247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 16209437 - 16209393
Alignment:
Q  77 aaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||    
T  16209437 aaatttggtggaactcatgtgaattttaaccaattaaagagagtg 16209393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 16816321 - 16816285
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  16816321 aatatatcatgaatttaacacttcctagcacttatca 16816285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 16855478 - 16855442
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  16855478 aatatatcatgaatttaacacttcctagcacttatca 16855442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 21066910 - 21066874
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  21066910 aatatatcatgaatttaacacttcctagcacttatca 21066874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 21340923 - 21340887
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  21340923 aatatatcatgaatttaacacttcctagcacttatca 21340887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 42094289 - 42094233
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaa 109  Q
    ||||||||||||| |||||||||||||||||||||    ||||||||||||||||||    
T  42094289 caccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaa 42094233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 12779588 - 12779530
Alignment:
Q  52 tcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    |||||||||||||| |||| ||||| |||||||||||   |||||||||||||||||||    
T  12779588 tcaccaaatcatgtgggtcacatatgaatttggtggatcccatgtgaattttaaccaat 12779530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 4237336 - 4237279
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    ||||||||||||| ||||||||| ||||||||||||   ||||| |||||||||||||    
T  4237336 caccaaatcatgtgggtcccatacaaatttggtggatcccatgtaaattttaaccaat 4237279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 12703532 - 12703460
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||| ||||| |||||||||| ||||||||| ||||| ||||  || |||||||||| || |||||||||||    
T  12703532 atttgatggaactcatgtgaatattaaccaatcaaagaaagtgtattgaaaaatgtgtgttaaaatgtgtgtt 12703460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 41496125 - 41496077
Alignment:
Q  73 atataaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    ||||||||||||| || || |||||||||||||||||| ||||||||||    
T  41496125 atataaatttggtagattttatgtgaattttaaccaatcaaagatagtg 41496077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 44247591 - 44247659
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    |||||||| |||| ||||||||| ||||||| ||||   ||||||||||||||||||| ||||| ||||    
T  44247591 caccaaattatgtgggtcccatacaaatttgatggatcccatgtgaattttaaccaatcaaagagagtg 44247659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 3466469 - 3466410
Alignment:
Q  57 aaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaaga 116  Q
    ||||| ||| |||||||||| ||||||||||   |||||||||||||||||||| |||||    
T  3466469 aaatcgtgtgggtcccatatgaatttggtgggtctcatgtgaattttaaccaatcaaaga 3466410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 42251216 - 42251299
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    |||||||| |||| || || ||||||||||||||||   |||||||||||||| |||| ||||| |||| ||| |||| |||||    
T  42251216 caccaaattatgtgggacctatataaatttggtggatcccatgtgaattttaatcaatcaaagagagtgtgttgaaaagtgtgt 42251299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 42029396 - 42029478
Alignment:
Q  54 accaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    |||||||||||  |  ||||||||||||||||||   |||||||||||||||||||| ||| | |||| ||| |||| |||||    
T  42029396 accaaatcatgcggaccccatataaatttggtgggtctcatgtgaattttaaccaataaaaaaaagtgtgttgaaaagtgtgt 42029478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 44247599 - 44247541
Alignment:
Q  78 aatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||  ||||||||||| ||||||| |||||||||  ||| ||||||||||    
T  44247599 aatttggtggaacccatgtgaatttcaaccaatcaaagatagtttgttgaaaaatgtgt 44247541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 2020430 - 2020393
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatcat 50  Q
    |||||||||||||||||||||||| || ||||||||||    
T  2020430 aatatatcatgaatttaacacttcttaacacttatcat 2020393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 15194621 - 15194564
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    ||||||||||||| ||||||||||| ||||||||  |  ||||||| |||||||||||    
T  15194621 caccaaatcatgtcggtcccatatatatttggtgcgacccatgtgacttttaaccaat 15194564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 16209428 - 16209481
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaac 106  Q
    ||||||||  ||| |||||||||||||||||||||  ||||| |||||||||||    
T  16209428 caccaaattttgtcggtcccatataaatttggtgggtttcatttgaattttaac 16209481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 17383846 - 17383773
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgtta 126  Q
    |||||||| |||| ||||||||| ||||||||||| |  ||| ||| ||||||||||| ||||| |||| ||||    
T  17383846 caccaaattatgtgggtcccatagaaatttggtgggacccatatgacttttaaccaataaaagagagtgtgtta 17383773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 18719791 - 18719734
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||| || ||||||||||||||||| ||| | |||| ||| ||||||||||    
T  18719791 atttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 18719734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 18719784 - 18719851
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    ||||||||||||| ||||||||||||||||| |||   |||||| || |||||||||| ||||| ||||    
T  18719784 caccaaatcatgtgggtcccatataaatttgatgggtctcatgt-aaatttaaccaatcaaagagagtg 18719851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 1473675 - 1473603
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    |||||||||||  ||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||    
T  1473675 atttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtgtt 1473603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 4033079 - 4032992
Alignment:
Q  47 tcatctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgt 134  Q
    |||||||||||||| |||| ||||||||||||||||| |||| | ||| | ||||| ||||||||||||| |||| ||| ||||||||    
T  4033079 tcatctcaccaaattatgtgggtcccatataaatttgatggattccatataaatttcaaccaattaaagagagtgtgttgaaaaatgt 4032992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 24783919 - 24784002
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||| | | ||||||||||||| ||||  |||||| |||||||| |||| |||||||||| ||||||||||||||    
T  24783919 caccaaatcatgtggattccatataaatttgatggatctcatgtaaattttaatcaatcaaagatagtgtgttaaaaaatgtgt 24784002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 6643401 - 6643318
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||| |||||||||||||||||||||     |||||||||||||||||| || || |||| ||||||| ||||||    
T  6643401 caccaaatcatgtgggtcccatataaatttggtggtcactatgtgaattttaaccaatcaatgagagtgtgttaaaatatgtgt 6643318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 479891 - 479791
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtg 149  Q
    |||||||||||||||| || || ||||||||||||||| ||  |||||||||||||||||| ||| | ||||  || |||||||| |||| |||| ||||    
T  479891 tctcaccaaatcatgtggggcc-atataaatttggtgggatcaatgtgaattttaaccaatcaaataaagtgttttgaaaaatgtttattaaaatttgtg 479793  T
Q  150 tt 151  Q
    ||    
T  479792 tt 479791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 4787767 - 4787868
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtg 149  Q
    ||||||||||||||||  | |||||||| |||| || ||| |||||||| ||||||||||| ||||| ||   |||||||||||| | || |||||||||    
T  4787767 tctcaccaaatcatgtgagacccatatagatttagtagaactcatgtgagttttaaccaatcaaagagagactgttaaaaaatgtatgttaaaatgtgtg 4787866  T
Q  150 tt 151  Q
    ||    
T  4787867 tt 4787868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 7693727 - 7693670
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    |||||||||||||   |||||||||||||||||||||||  |||||||||||||||||    
T  7693727 caccaaatcatgtcactcccatataaatttggtggaattagtgtgaattttaaccaat 7693670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 12731640 - 12731577
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaaga 116  Q
    ||||||||||||| ||||||| ||||||||| |||   |||||||||||||||||||| |||||    
T  12731640 caccaaatcatgtgggtcccaaataaatttgatgggtctcatgtgaattttaaccaatcaaaga 12731577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 4494477 - 4494397
Alignment:
Q  56 caaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||  ||| |||||||||||||||||    | |||||||||||||||| ||||| |||| ||| ||||||||||    
T  4494477 caaatcatgtgagtctcatataaatttggtggatcagacgtgaattttaaccaatcaaagaaagtgtgttgaaaaatgtgt 4494397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 4033086 - 4033143
Alignment:
Q  94 tgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||||||| ||||||||||  || |||| ||||| || |||||||||||    
T  4033086 tgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatgtgtgtt 4033143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 26328247 - 26328211
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaa 89  Q
    |||| |||||||| |||||||||||||||||||||||    
T  26328247 caccgaatcatgtgggtcccatataaatttggtggaa 26328211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 23317962 - 23318025
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaaga 116  Q
    ||||||||||||| |||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  23317962 caccaaatcatgtgggtcccatataaatttagtggatctcatgtgaattttaaccaattaaaga 23318025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 2542788 - 2542705
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||| ||| |||||||||||||||||   |||||| ||||||||||||| ||||| |||| ||| ||||||||||    
T  2542788 caccaaatcatgtgggttccatataaatttggtgggcctcatgtaaattttaaccaatcaaagagagtgtgttgaaaaatgtgt 2542705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 31970206 - 31970123
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||| |||||||||||||||||||||  |  |||||||||||||||||| ||| | |||| ||| ||||||||||    
T  31970206 caccaaatcatgtgggtcccatataaatttggtgggttcaatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 31970123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 27667083 - 27666984
Alignment:
Q  49 atctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgt 148  Q
    |||||||||||||||||  ||||||||||||||| || ||||| ||||||||||||| |||| ||| | | ||  ||||||||||| | || ||||||||    
T  27667083 atctcaccaaatcatgtgagtcccatataaatttagtagaatttatgtgaattttaatcaatcaaatacaatgtattaaaaaatgtatgttaaaatgtgt 27666984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 49822581 - 49822664
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    |||||||| || | |||||| |||||||||| ||| || ||||||||||||||||||| ||||| |||| ||| ||||||||||    
T  49822581 caccaaattatatgggtcccgtataaatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgt 49822664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 40668979 - 40669065
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    |||||| |||| |||| || ||||||||||||||||||||  | ||||||||||||||||| ||||| |||| ||| |||| |||||    
T  40668979 tctcacaaaattatgtgggacccatataaatttggtggaacccgtgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 40669065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 45563119 - 45563201
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtg 135  Q
    ||||||||||||||| || |||||||||||||||||  |||||| |||||||||| || ||||| |||| ||| |||| ||||    
T  45563119 caccaaatcatgttgatctcatataaatttggtggatctcatgtaaattttaaccgatcaaagaaagtgtgttgaaaagtgtg 45563201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 731416 - 731359
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    ||||||||||||| |||||||||||||||||||| |  ||||||||||||||| ||||    
T  731416 caccaaatcatgtgggtcccatataaatttggtgaatctcatgtgaattttaatcaat 731359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 23761346 - 23761310
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  23761346 aatatatcatgaatttaacacttcctagcacttatca 23761310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 26622699 - 26622735
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  26622699 aatatatcatgaatttaacacttcctagcacttatca 26622735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 32798952 - 32798988
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  32798952 aatatatcatgaatttaacacttcctagcacttatca 32798988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 41304513 - 41304477
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  41304513 aatatatcatgaatttaacacttcctagcacttatca 41304477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 34437651 - 34437748
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||| || ||||||||| ||||| || |  ||||||||||||||||||| ||||| |||| ||| |||| || || || |||||||||||    
T  34437651 caccaaatcatgtgggacccatataa-tttggggggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgtt 34437748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 18075217 - 18075266
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattt 102  Q
    ||||||||||||| ||||||||||||||||||||| || ||| |||||||    
T  18075217 caccaaatcatgtgggtcccatataaatttggtgggatccatatgaattt 18075266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 38663704 - 38663765
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaa 114  Q
    ||||||||||| | ||||| |||||||||||||||    |||||||||||||||||||||||    
T  38663704 caccaaatcatatgggtcctatataaatttggtgggtcccatgtgaattttaaccaattaaa 38663765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 1175831 - 1175867
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1175831 aatatatcatgaatttaacacttcctagcccttatca 1175867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 45925197 - 45925133
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaa 114  Q
    ||||||||||| |||| ||||||||||||||||| |||| | ||| | |||||||| ||||||||    
T  45925197 tctcaccaaattatgtgggtcccatataaatttgatggactccatatcaattttaatcaattaaa 45925133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 32543766 - 32543808
Alignment:
Q  72 catataaatttggtggaattcatgtgaattttaaccaattaaa 114  Q
    |||||||||||||  | ||||||||||||||||||||||||||    
T  32543766 catataaatttggcaggattcatgtgaattttaaccaattaaa 32543808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 7444334 - 7444387
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaac 106  Q
    ||||||||||||| ||||||||||||||||||| |    |||||||||||||||    
T  7444334 caccaaatcatgtgggtcccatataaatttggtaggtcccatgtgaattttaac 7444387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 45215380 - 45215437
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    ||||||||||||| ||  || |||||||||||||||| |||| |||||||||| ||||    
T  45215380 caccaaatcatgtaggatccgtataaatttggtggaactcatatgaattttaatcaat 45215437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 49403528 - 49403604
Alignment:
Q  56 caaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaat 132  Q
    ||||| |||| ||| |||||||||||||||||   |||||||||||||||| ||| ||| | |||| ||| ||||||    
T  49403528 caaattatgtgggttccatataaatttggtgggtctcatgtgaattttaacaaataaaaaaaagtgtgttgaaaaat 49403604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 2276363 - 2276280
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    |||||||| |||| |||||| |||||||||||||| || ||||||||||||||||||| ||||| |||| ||| |||| |||||    
T  2276363 caccaaattatgtgggtcccttataaatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 2276280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 2276355 - 2276406
Alignment:
Q  78 aatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaa 129  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  2276355 aatttggtgggattcatgtgaattttaaccaattaaagatagtgtgttaaaa 2276406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 7526207 - 7526142
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaag 115  Q
    ||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||| ||| ||||    
T  7526207 tctcaccaaatcatgctggtctcatataaatttggtgggatccatgtgaattttaacaaatcaaag 7526142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 15953717 - 15953754
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatcat 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15953717 aatatatcatgaatttaacacttcctagcacttatcat 15953754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 19091022 - 19091059
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatcat 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19091022 aatatatcatgaatttaacacttcctagcacttatcat 19091059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 1947827 - 1947791
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  1947827 aatatatcatgaatttaacacttcctagcacttatca 1947791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 12275824 - 12275756
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtg 121  Q
    ||||||||||||| |||||||||||||||||||||    ||||||| |||||||||||| |||| ||||    
T  12275824 caccaaatcatgtgggtcccatataaatttggtgggtcccatgtgatttttaaccaattgaagagagtg 12275756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 33849694 - 33849658
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  33849694 aatatatcatgaatttaacacttcctagcacttatca 33849658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 316441 - 316389
Alignment:
Q  57 aaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaa 109  Q
    |||||| || |||| |||| ||||||||||||| |||||||||||||||||||    
T  316441 aaatcaagtgggtctcatacaaatttggtggaactcatgtgaattttaaccaa 316389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 15925392 - 15925428
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15925392 aatatatcatgaatttaacactttctagcacttatca 15925428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 26862999 - 26862923
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaa 129  Q
    ||||||||||||| ||||| |||||||| ||||| |   ||||||||||||||||||| || || |||| |||||||    
T  26862999 caccaaatcatgtgggtcctatataaatatggtgaatcccatgtgaattttaaccaatcaaggagagtgtgttaaaa 26862923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 26862992 - 26863064
Alignment:
Q  79 atttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||| |  ||||||||||||||||||||||||| |||  | | |||| |||||||| |||||||||||    
T  26862992 atttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgtgtt 26863064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 33597015 - 33597068
Alignment:
Q  55 ccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    |||||| ||||||||||||||| |||| ||||||  ||||||||||||||||||||    
T  33597015 ccaaattatgttggtcccatatgaattgggtgga--tcatgtgaattttaaccaat 33597068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 10056707 - 10056652
Alignment:
Q  55 ccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    ||||||||||| ||||||||||||| |||||||  | |||||||||||| ||||||    
T  10056707 ccaaatcatgtgggtcccatataaaattggtgggttccatgtgaattttgaccaat 10056652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 36992872 - 36992939
Alignment:
Q  49 atctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaaga 116  Q
    |||||||||||||||||  ||||||||| | ||||||||   ||||||||||| |||| |||||||||    
T  36992872 atctcaccaaatcatgtaagtcccatatgattttggtgggtctcatgtgaattctaacaaattaaaga 36992939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 46074146 - 46074184
Alignment:
Q  91 tcatgtgaattttaaccaattaaagatagtgcgttaaaa 129  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  46074146 tcatgtgaattttaaccaattaaagagagtgtgttaaaa 46074184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 640932 - 640985
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaac 106  Q
    ||||||||||||| | | ||||||||||||||| ||  ||||||||||||||||    
T  640932 caccaaatcatgtggattccatataaatttggtagatctcatgtgaattttaac 640985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 3235636 - 3235547
Alignment:
Q  62 atgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    |||| |||||||| |||||||| |||   |||||||||||||||||||| ||||| ||||  ||  ||| ||||| || |||||||||||    
T  3235636 atgtgggtcccatgtaaatttgatgggtctcatgtgaattttaaccaatcaaagagagtgtattggaaagtgtgtgttaaaatgtgtgtt 3235547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 18802893 - 18802954
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaa 114  Q
    |||||||| |||||||| |||||||||||| | |||   ||| |||||||||||||||||||    
T  18802893 caccaaataatgttggttccatataaatttcgcggatcccatatgaattttaaccaattaaa 18802954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 40803214 - 40803295
Alignment:
Q  71 ccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgttt 152  Q
    |||||||| |||||||||   ||||||||||||||||||| ||| ||||||  ||||||| ||| | ||  |||||||||||    
T  40803214 ccatataagtttggtggatcccatgtgaattttaaccaataaaaaatagtgttttaaaaagtgtatgttagaatgtgtgttt 40803295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 45200503 - 45200564
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaa 114  Q
    ||||||||||||| | || |||||||||||||||||  |||  |||||||||| ||||||||    
T  45200503 caccaaatcatgtggatctcatataaatttggtggacctcaaatgaattttaatcaattaaa 45200564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 48497688 - 48497741
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaac 106  Q
    ||||||||||||| | |||||  ||||||| ||||| |||||||||||||||||    
T  48497688 caccaaatcatgtggatcccacgtaaatttagtggatttcatgtgaattttaac 48497741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 32097478 - 32097538
Alignment:
Q  56 caaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaaga 116  Q
    ||||| ||||||||  |||||||||||| ||||||||||||  |||||| | |||||||||    
T  32097478 caaattatgttggtttcatataaatttgatggaattcatgtagattttagcgaattaaaga 32097538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 36914958 - 36914877
Alignment:
Q  71 ccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgttt 152  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||| |  ||| |||||||||| || |||||| |||||    
T  36914958 ccatataaatttggttgaatccatgtgaattttaatcaattaaagataatatgttgaaaaatgtgtgttaaaatgtatgttt 36914877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 34504463 - 34504384
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaat 132  Q
    ||||||||||||| ||||||||||||||||||||   | ||||||||||||||||||| ||| | |||| ||| ||||||    
T  34504463 caccaaatcatgtgggtcccatataaatttggtgagttccatgtgaattttaaccaatcaaaaagagtgtgttgaaaaat 34504384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 17893403 - 17893305
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    |||||||||||||  | |||||||| |||| |||||| |||||||| ||||||| ||| ||||| |||  |||||||||||| | || |||||||||||    
T  17893403 caccaaatcatgtgagacccatatagatttagtggaactcatgtgagttttaactaatcaaagagagtctgttaaaaaatgtatgttaaaatgtgtgtt 17893305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 40175980 - 40175923
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    |||||||| |||| ||||||||||||||||||||||   |||||||||||||||||||    
T  40175980 caccaaattatgtgggtcccatataaatttggtggatcccatgtgaattttaaccaat 40175923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 38835050 - 38835110
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    |||||||||||||||  ||||||||||||||||||| || |  ||||||||||||||||||    
T  38835050 tctcaccaaatcatgcgggtcccatataaatttggtagattctatgtgaattttaaccaat 38835110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 4994208 - 4994304
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgtattgaaatgtgtgtt 151  Q
    ||||||||||||| |||||||||||||||| ||||   ||||   ||||||||||||| ||||  |||| |||||||| ||||| || |||||||||||    
T  4994208 caccaaatcatgtgggtcccatataaattttgtgggtctcatacaaattttaaccaatcaaag--agtgtgttaaaaattgtgtgttaaaatgtgtgtt 4994304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 2288651 - 2288715
Alignment:
Q  52 tcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaaga 116  Q
    |||||||||||  | ||||||||||||||||| ||||   ||||||||||||||||||| |||||    
T  2288651 tcaccaaatcacatgggtcccatataaatttgatggatcccatgtgaattttaaccaatcaaaga 2288715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 21125039 - 21124979
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaat 110  Q
    ||||| |||||||||| | ||||||||||||||| |||| | ||| |||||||||||||||    
T  21125039 tctcatcaaatcatgtggatcccatataaatttgatggattccatatgaattttaaccaat 21124979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 27072865 - 27072902
Alignment:
Q  50 tctcaccaaatcatgttggtcccatataaatttggtgg 87  Q
    |||||||||||||||| | |||||||||||||||||||    
T  27072865 tctcaccaaatcatgtggatcccatataaatttggtgg 27072902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 2171056 - 2171128
Alignment:
Q  57 aaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaa 129  Q
    |||| |||| || ||||||||||||||||||  | || | |||||||||||||||||| | |||| |||||||    
T  2171056 aaattatgtcggacccatataaatttggtggggtccaagcgaattttaaccaattaaaaagagtgtgttaaaa 2171128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 11128 - 11092
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  11128 aatatatcatgaatttaacacttcctagcacttatca 11092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 7874 - 7838
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  7874 aatatatcatgaatttaacacttcctagcacttatca 7838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 66007 - 66043
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  66007 aatatatcatgaatttaacacttcctagcacttatca 66043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 71676 - 71712
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcacttatca 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  71676 aatatatcatgaatttaacacttcctagcacttatca 71712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 8234 - 8316
Alignment:
Q  53 caccaaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaagatagtgcgttaaaaaatgtgt 136  Q
    ||||||||||||| ||||||| |||| |||||||| |||||||||||||||| ||||| ||| | | |||||| |||| |||||    
T  8234 caccaaatcatgtgggtcccacataa-tttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgt 8316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 16319 - 16351
Alignment:
Q  13 aatatatcatgaatttaacacttcctagcactt 45  Q
    |||||||||||||||||||||||||||||||||    
T  16319 aatatatcatgaatttaacacttcctagcactt 16351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 136404 - 136344
Alignment:
Q  56 caaatcatgttggtcccatataaatttggtggaattcatgtgaattttaaccaattaaaga 116  Q
    ||||||||||  | |||||||||||||| ||| | |||| ||||||||||||||| |||||    
T  136404 caaatcatgtgtgacccatataaatttgatgggactcatatgaattttaaccaatcaaaga 136344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University