View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_high_9 (Length: 395)
Name: NF15495_high_9
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 73 - 270
Target Start/End: Original strand, 45333640 - 45333836
Alignment:
| Q |
73 |
tcataggaaaatgttgcagagccagtatacccagtatccttctccttgaatttgtccgttagtccctgcaatacaa----tcaaaagtgaggtattttat |
168 |
Q |
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| T |
45333640 |
tcataggagaatgttgcaaagccagtatacccagtatccttctccttgaatttgtctgttagtccctgcaatacacacagtcaatagtgaggtattttat |
45333739 |
T |
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| Q |
169 |
cttgccacgaggaacatatcatattataggcttgatttcttgctccctaagttagagcaaaatttatggttcatatactaggaaaataaaaccaggttga |
268 |
Q |
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| T |
45333740 |
catccaatgaggaa-----catattataagcttgatttctagctccctgagttagagcaaaatttaaggttcatatactaggaaaacaaaaccaggttga |
45333834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 45334126 - 45334186
Alignment:
| Q |
317 |
agaaattatagaacaatgtatttcgatagctcaccttcacagtaagacaacacctgcaata |
377 |
Q |
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| T |
45334126 |
agaaataacagaacaatgtatttcgatagctcaccttcacagtaagacaacacctgcaata |
45334186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 20788196 - 20788362
Alignment:
| Q |
26 |
tactatcctaagctatcaagaatggtaggacagtctgcataaatgcctcataggaaaatgttgcagagccagtatacccagtatccttctccttgaattt |
125 |
Q |
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| T |
20788196 |
tactatcctaagctatcaggaatggcaggacggtcagcataaacgcctcataggaaaatgttgcagagccggtataccctgtatccttctccttgaattt |
20788295 |
T |
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| Q |
126 |
gtccgttagtccctgcaatacaatcaaa----agtgaggtattttatcttgccacgaggaacatatc |
188 |
Q |
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| T |
20788296 |
gtccgttagtccctgaaatacacacaaactaaagtcagatattttgtcttgccaaaaggaacatatc |
20788362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 20788898 - 20788940
Alignment:
| Q |
333 |
tgtatttcgatagctcaccttcacagtaagacaacacctgcaa |
375 |
Q |
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| T |
20788898 |
tgtatttcaatagctcaccttcacagtaagacaacacctgcaa |
20788940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 11271496 - 11271381
Alignment:
| Q |
149 |
tcaaaagtgaggtattttatcttgccacgaggaacatatcatattataggcttgatttcttgctccctaagttagagcaaaatttatggttcatatacta |
248 |
Q |
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| T |
11271496 |
tcaaaagtgaggtattttatcatccaatgaggaacatatcataa-----gcttgatttctagctccctgagttagatcaaaaattaaggttcatata-ga |
11271403 |
T |
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| Q |
249 |
ggaaaataaaaccaggttgatt |
270 |
Q |
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| T |
11271402 |
ggaaaataaaaccaggttgatt |
11271381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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