View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_12 (Length: 383)
Name: NF15495_low_12
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 41074658 - 41074818
Alignment:
| Q |
5 |
cacttatgatatctcattaagacggttttagtttgagtctttcctagtggtgtgggattgcaaattgtcaatagcttcacctgttcttctggttgatcag |
104 |
Q |
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| T |
41074658 |
cacttatgatatctcattaagacggttttagtttgagtctttcctagtggtgtgggattgcaaattgtcaatagcttcacctgttcttctggttgatcag |
41074757 |
T |
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| Q |
105 |
aatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcagatcatttatg |
165 |
Q |
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| T |
41074758 |
aatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcagatcatttatg |
41074818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 6 - 383
Target Start/End: Original strand, 41086057 - 41086445
Alignment:
| Q |
6 |
acttatgatatctcattaagacggttttagtttg--agtctttcctagtggtgtgggattgc-aaattgtcaatagcttcacctgttcttctggttgatc |
102 |
Q |
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| T |
41086057 |
acttatgatatctcataaagacatttctagtttgcgagtcttttctagtggcatgggattgctaaagtgtggatagcttcacctgttcttctggttgatc |
41086156 |
T |
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| Q |
103 |
agaatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcaga--tcatttatgac------atggttttggctggaaatagcagaatg |
194 |
Q |
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| T |
41086157 |
agaatttatctgtgtgaaaggtgtgacactgttttgta--tctggtgtgttataaatcatttatagctctttgatggttttggctggaaataa-agaatg |
41086253 |
T |
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| Q |
195 |
tttgttgtcactaaactgaaacaa---tgatgattgtggatctaatggtgagtttatgtcgttgaaagttttctgctctggaatactgctgtgttttgtg |
291 |
Q |
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| T |
41086254 |
attgttgtcgctaaactgaaacaaatttgatgattgcggatctaatgctgagtttatgtcatggaatgtgttctgctctggagcactgttgtgtcctgtg |
41086353 |
T |
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| Q |
292 |
ccatgtagctgattttgtaaacgggcagttgctagttaatataccttcgaggatcaggactctggaagttaatatggtgatggtattctctg |
383 |
Q |
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| T |
41086354 |
ccatgttgctgattttgtaaattggatgttcccagttgatataccttggaggattgggactctggtagttaatatggtgatagtattctctg |
41086445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 244 - 383
Target Start/End: Original strand, 41074813 - 41074952
Alignment:
| Q |
244 |
tttatgtcgttgaaagttttctgctctggaatactgctgtgttttgtgccatgtagctgattttgtaaacgggcagttgctagttaatataccttcgagg |
343 |
Q |
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| T |
41074813 |
tttatgtcattgaaagttttctgctctggaatactgctgtgttttgtgccatgttgctgattttgtaaacaggcagttcctagttgatataccttcgagg |
41074912 |
T |
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| Q |
344 |
atcaggactctggaagttaatatggtgatggtattctctg |
383 |
Q |
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| T |
41074913 |
atcaggactctggaagttaatatggtgatagtattctctg |
41074952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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