View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15495_low_14 (Length: 369)
Name: NF15495_low_14
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 30261484 - 30261836
Alignment:
| Q |
1 |
tagacacatggacgaattcttttggttttgagcagatgacgaattttgaaaggtcacaatttctggactattctttcctagactttcaaggaactgtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30261484 |
tagacacatggacgaattcttttggttttgagcagatgacgaattttgaaaggtcacaatttctggactattctttcctagactttcaaggaactgtcat |
30261583 |
T |
|
| Q |
101 |
gtgtcagaaacttttgacaagatttccatctccggagtcggttgtaacaagaggttcgtagcttcttatgattcctgtattagccgttagtttggcataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30261584 |
gtgtcagaaacttttgacaagatttccatctccggaatcggttgtaacaagaggttcgtagcttcttatgattcctgtattagccgttagtttggcataa |
30261683 |
T |
|
| Q |
201 |
tcacaatgcggtaaagttattgtcgcaataactacactttagagctttaacagattcagtgtcattgtgatattgcgaaactcaccgacaatctaaatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30261684 |
tcacaatgcggtaaagttattgtcgcaataactacactttagagctttaacaaatttagtgtcattgtgatattgcgaaactcaccgacaatctaaatat |
30261783 |
T |
|
| Q |
301 |
gcacgtaactaaacagtttcctcgctgattggattataaccgtattttttcat |
353 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30261784 |
gcacataattaaacagtttcctcgctgattggattataaccgtattttttcat |
30261836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University