View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_15 (Length: 361)
Name: NF15495_low_15
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_15 |
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| [»] scaffold1437 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 33139483 - 33139146
Alignment:
| Q |
8 |
agagatgaagaacaataaaaagaaacataacagctttatatgcctcaaagtggttcaattgttcaaacttgagagtgttctatgaacttcattcaaaaag |
107 |
Q |
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||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33139483 |
agagaagaagaacaataaaaagaaatatagcagctttatatgcctcaaagtggttcaattgttcaaacttgagagtgttctatgaacttcattcaaaaag |
33139384 |
T |
|
| Q |
108 |
tacctagtattaactcttgcattggtagaagaggcacatgccgaagatgaagctgaaattacagatgaacttttaggtagtgaaattagactatcatgtg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33139383 |
tacctagtattaactcttgcattggtagaagaggcacatgctgaagatgaagctgaaattacagatgaacttttaggtagtgaaattagattatcatgtg |
33139284 |
T |
|
| Q |
208 |
agctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagacatattgtggtggtgccacctccatgaaaaa |
307 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
33139283 |
agctaatttctctatcctcttcggtaattgtttccatcatatttgatgctctttgcctcataacagaaacatattgtggtggtgccacctccataaaaaa |
33139184 |
T |
|
| Q |
308 |
tcttgcaatgcgagaacttgccattcttaatgtgaatt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33139183 |
tcttgcaatgcgagaacttgccattcttaatgtgaatt |
33139146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 33149323 - 33149158
Alignment:
| Q |
178 |
ttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagac |
277 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| || |
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| T |
33149323 |
ttttaggtagtgaaattacactatcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
33149224 |
T |
|
| Q |
278 |
atattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaatgtgaa |
343 |
Q |
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| T |
33149223 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaa |
33149158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 33143104 - 33142971
Alignment:
| Q |
70 |
tcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtag---aagaggcacatgccgaagatgaagctgaaat |
166 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||| |||| |||||||| |||||| |||||||||| |
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| T |
33143104 |
tcaaacttgagagtgttctatgaacttcattcagaaagtacctagtgttaattgttgcattggtagaagaagatgcacatgcagaagataaagctgaaat |
33143005 |
T |
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| Q |
167 |
tacagatgaacttttaggtagtgaaattagacta |
200 |
Q |
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| T |
33143004 |
tgcagatgaacttttaggttttgaaattagacta |
33142971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 33142969 - 33142897
Alignment:
| Q |
235 |
ttgtttccatcatatttgatgctctatgcctcataacagagacatattgtggtggtgccacctccatgaaaaa |
307 |
Q |
| |
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||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||| | ||||||||| |
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| T |
33142969 |
ttgtttcaatcatatttgatgttctatgcctcatcacagaaacatattgtggtggtgccactttcatgaaaaa |
33142897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 34011981 - 34011816
Alignment:
| Q |
178 |
ttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagac |
277 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| || |
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| T |
34011981 |
ttttaggtagtgaaattacactatcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
34011882 |
T |
|
| Q |
278 |
atattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaatgtgaa |
343 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
34011881 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaa |
34011816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 178 - 343
Target Start/End: Original strand, 3215308 - 3215473
Alignment:
| Q |
178 |
ttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagac |
277 |
Q |
| |
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|||||||||||||||||| ||| ||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| || |
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| T |
3215308 |
ttttaggtagtgaaattacactgtcatgtgagttaattttcctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
3215407 |
T |
|
| Q |
278 |
atattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaatgtgaa |
343 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
3215408 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaa |
3215473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 69 - 323
Target Start/End: Original strand, 32349906 - 32350160
Alignment:
| Q |
69 |
ttcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtagaagaggcacatgccgaagatgaa---gctgaaa |
165 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||| |||| | | | |||| |
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| T |
32349906 |
ttcaaacttgagagtgttctatgaacttccttcaggaagtacctagaattaacaactgcattggtagaagaggcacatgcagaagcagcaagagatgaag |
32350005 |
T |
|
| Q |
166 |
ttacagatgaacttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcct |
265 |
Q |
| |
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|| |||||| |||||||| ||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||| |||| |||| |
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| T |
32350006 |
tt---gatgaatttttaggtggtgaaattacactatcatttgagctcatttccatatcctcttcagtaattgtttccatcatcattgatgttctacgcct |
32350102 |
T |
|
| Q |
266 |
cataacagagacatattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaa |
323 |
Q |
| |
|
||| || ||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
32350103 |
catcacgctaacatactgtggtggtgccacctccatgaaaaaccttgcaatgcgagaa |
32350160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 338
Target Start/End: Original strand, 32342783 - 32343040
Alignment:
| Q |
69 |
ttcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtagaagaggcacatgccgaagatgaagctgaaatta |
168 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| ||| || ||||| |||||||||||||||||||| || ||||||||| | |
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| T |
32342783 |
ttcaaacttgagagtgttctatgaacttccttcaggaagtccctggtgttaacagttgcattggtagaagaggca---gcaagtgatgaagctaa----- |
32342874 |
T |
|
| Q |
169 |
cagatgaacttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcat |
268 |
Q |
| |
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||||||||| ||| ||||||| | ||| |||| |||| | ||||||||||| ||||| || |||||||||||||| ||||||| |||||||||||| |
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|
| T |
32342875 |
----tgaactttttggtggtgaaatcacactgtcatttgagttgatttccctatcatcttcggtgattgtttccatcatctttgatgttctatgcctcat |
32342970 |
T |
|
| Q |
269 |
aacagagacatattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaat |
338 |
Q |
| |
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|| ||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
32342971 |
cacgctaacatactgtggtggtgctacctccatgaaaaaccttgcaatgcgagaatttgccattgttaat |
32343040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 761 - 596
Alignment:
| Q |
178 |
ttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagac |
277 |
Q |
| |
|
|||||||||||||||||| | | ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| || |
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| T |
761 |
ttttaggtagtgaaattacattgtcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
662 |
T |
|
| Q |
278 |
atattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaatgtgaa |
343 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |
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|
| T |
661 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgtcattcttaatgtgaa |
596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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