View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_16 (Length: 342)
Name: NF15495_low_16
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 6080542 - 6080853
Alignment:
| Q |
16 |
tatatgtatatgattttacatattattaattaagtttatgatgaacataacatattaaaattttaataatgtttagatgaatctcttgaaattaaatgag |
115 |
Q |
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| T |
6080542 |
tatatatatattattttacagattattaattaagtttatgatgaacagaacatattaaaattttaataatgtttagatgaatctcttcaaattaaatgag |
6080641 |
T |
|
| Q |
116 |
gtcttggattccaaccaagttttggcatacagtaaacactataattcttaggcatctggaatgggaagtgttttagctaatagggaccaaacccattagg |
215 |
Q |
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| T |
6080642 |
gtcttggattccaaccaagttttggcatacagtaaacactataattcttaggcatctggaatgggaagtgttttagctaatagggaccaaacccattagg |
6080741 |
T |
|
| Q |
216 |
cagaaggcacctcctccatctaataatagccatcaatgtttgtataattccttctactttctttctcatctcttacgcctagatcacacctttaacagaa |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6080742 |
cagtaggcacctcctccatctaataatagccatcaatgtttgtatagttacttctactttctttctcatctcttacgcctagatcacacctttaaaagaa |
6080841 |
T |
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| Q |
316 |
tatatatttaat |
327 |
Q |
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|||||||||||| |
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| T |
6080842 |
tatatatttaat |
6080853 |
T |
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