View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_22 (Length: 294)
Name: NF15495_low_22
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 54525670 - 54525408
Alignment:
| Q |
11 |
caaaggatgagaattggtattatctaaactcacactacaaatgaaattataagcaattttttcattaaattgaccaacagaagataaatcccgattctgg |
110 |
Q |
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| T |
54525670 |
caaaggatgagaattggtattatctaaactcacactacaaatga-----taagcaattttttcattaaattgaccaacagaagataaatcccgattctgg |
54525576 |
T |
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| Q |
111 |
atatcattcccacttggcgcatgttcatcgaggttttagattagttacttattggaaaatgaattcaagaattttattggagatcatattccaattccaa |
210 |
Q |
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| T |
54525575 |
atatcattcccacttggcgcatgttcatcgaggttttagattagttacttattggaaaatgaattcaagaattttattggagatcatattccaattccaa |
54525476 |
T |
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| Q |
211 |
tcattatttaggacaaagatttgatattgggagttgagtctctcgaggagtgtcctgaccatcattaa |
278 |
Q |
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| T |
54525475 |
tcattatttaggacagagatttgagattgggagttgagtctctcgaggagtgtcctgaccatcattaa |
54525408 |
T |
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