View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15495_low_25 (Length: 253)

Name: NF15495_low_25
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15495_low_25
NF15495_low_25
[»] chr5 (4 HSPs)
chr5 (11-253)||(21264823-21265065)
chr5 (11-178)||(22929424-22929591)
chr5 (11-207)||(23021424-23021620)
chr5 (19-88)||(22981423-22981492)
[»] scaffold0009 (1 HSPs)
scaffold0009 (11-192)||(22340-22521)
[»] scaffold0328 (1 HSPs)
scaffold0328 (34-146)||(9891-10003)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 21264823 - 21265065
Alignment:
Q  11 cacagacctcaaatgagcaaagttataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaacacttgcagtggaagattactaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21264823 cacagacctcaaatgagcaaagttataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaacacttacagtggaagattactaca 21264922  T
Q  111 aagccttcttttcacgcaagctacaagggaaatcatgccttgatcttacgagagtccaaaatgagaatagtaagtgataaaattattgtaggactatttg 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21264923 aagcattcttttcacgcaagctacaagggaaatcatgccttgatcttatgagagtccaaaatgagaatagcaagtgataaaattattgtaggactatttg 21265022  T
Q  211 agctgaaaataaacagttaccgtatgtcgtagcgcaggtacat 253  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  21265023 agctgaaaataaacagttactgtatgtcgtagcgaaggtacat 21265065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 22929424 - 22929591
Alignment:
Q  11 cacagacctcaaatgagcaaagttataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaacacttgcagtggaagattactaca 110  Q
    |||||||||||||| |||||||||||||||||||||| ||  |||||||||| ||||||||||||||| ||||||| |||| | ||||||||||||||||    
T  22929424 cacagacctcaaataagcaaagttataggtccaacaccaacacttgttactcctgaaaggcctgcattattcaaaaaacttactgtggaagattactaca 22929523  T
Q  111 aagccttcttttcacgcaagctacaagggaaatcatgccttgatcttacgagagtccaaaatgagaat 178  Q
    |||| ||||||||||| ||||||||||| || |||||||||||| ||| |||| ||||||||||||||    
T  22929524 aagcattcttttcacgtaagctacaaggaaagtcatgccttgatattatgagaatccaaaatgagaat 22929591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 23021620 - 23021424
Alignment:
Q  11 cacagacctcaaatgagcaaagttataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaacacttgcagtggaagattactaca 110  Q
    |||||||||||||||||||  |||||||||||||||| ||| |||||||| | |||||| ||||||||||||||||||||| | || |||||||||||||    
T  23021620 cacagacctcaaatgagcaccgttataggtccaacaccaagacttgttacccctgaaagacctgcattgttcaaaacacttaccgttgaagattactaca 23021521  T
Q  111 aagccttcttttcacgcaagctacaagggaaatcatgccttgatcttacgagagtccaaaatgagaatagtaagtgataaaattattgtaggactat 207  Q
    |||   | ||||||||| ||||||| ||||||||||| |||||||||| |||| | ||||| || ||||| ||||||||||| |||  |||||||||    
T  23021520 aagtaatattttcacgccagctacaggggaaatcatgtcttgatcttatgagaattcaaaaagataataggaagtgataaaagtatcataggactat 23021424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 22981492 - 22981423
Alignment:
Q  19 tcaaatgagcaaagttataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaaca 88  Q
    |||||||||||  |||||||||||||||| ||| ||| ||||   |||||| ||||||||||||||||||    
T  22981492 tcaaatgagcagtgttataggtccaacaccaagccttattacagctgaaagacctgcattgttcaaaaca 22981423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 22521 - 22340
Alignment:
Q  11 cacagacctcaaatgagcaaagttataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaacacttgcagtggaagattactaca 110  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||| || | || |||||||||||||    
T  22521 cacagacctcagatgagcaaagttataggtccaacacaaaaacttgttactcctgaaaggcctgcattgttcaaaacaattactgtagaagattactaca 22422  T
Q  111 aagccttcttttcacgcaagctacaagggaaatcatgccttgatcttacgagagtccaaaatgagaatagtaagtgataaaa 192  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||| ||||    
T  22421 aagcattcttttcacgcaagctacaagggaaatcatgcattgatcttatgagaatccaaaacgagaatagtaagtgacaaaa 22340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 9891 - 10003
Alignment:
Q  34 tataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaacacttgcagtggaagattactacaaagccttcttttcacgcaagcta 133  Q
    |||||| |||||||  || ||||| |||| |||||| |||||||||||||||||| |||| |  | ||||||||  |||||   | ||||| ||||| ||    
T  9891 tataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaacaattgctgctgcagattacttgaaagcacacctttcaagcaagata 9990  T
Q  134 caagggaaatcat 146  Q
    |||||||||||||    
T  9991 caagggaaatcat 10003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University