View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_27 (Length: 249)
Name: NF15495_low_27
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 38280720 - 38280789
Alignment:
| Q |
42 |
taaatacaaaagacaaaatacccatttatttattgccaataaatacacatccccacttttatcattgtac |
111 |
Q |
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| T |
38280720 |
taaatacaaaagacaaaatacccatttatttattgccaataaatacacatccccacttttatcattgtac |
38280789 |
T |
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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 38280866 - 38280923
Alignment:
| Q |
192 |
cattgtactaaaaatagagtatatacacaaaagacaaaactactcatattttattctc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38280866 |
cattgtactaaaaatagagtatatacacaaaagacaaaactactcatattttattctc |
38280923 |
T |
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