View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_29 (Length: 246)
Name: NF15495_low_29
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 40621640 - 40621850
Alignment:
| Q |
18 |
gaacctaaaatcttttgaaaatggtacaaaacaactatcacctaacaaagctacataagcaaaaggaggaatgagatcaccatcgtaatgataagttcat |
117 |
Q |
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| T |
40621640 |
gaacctaaaatcttttgaaaatggtacagaacaactatcacctaacaaagctacataagcaaaaggaggaatgagatcaccatcgtaatgataagttcat |
40621739 |
T |
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| Q |
118 |
tactctctttaagttggacggatcttttcatgaatgcaaattatacggacccttaaactgaacctaaccatatgtttaaactttaaagagctaaattact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40621740 |
tactctctttaagttggacggatcttttcatgaatgcaaattatacggacccttaaactgaacctaaccatatgtttaaactttaaagagctaaattact |
40621839 |
T |
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| Q |
218 |
ccatccgatct |
228 |
Q |
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| T |
40621840 |
ctatccgatct |
40621850 |
T |
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