View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15495_low_3 (Length: 548)
Name: NF15495_low_3
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 193 - 532
Target Start/End: Complemental strand, 19172701 - 19172362
Alignment:
| Q |
193 |
tgttgaaatcagtattcaacagacagaaacaacacacatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172701 |
tgttgaaatcagtattcaacagacagaaacaacacacatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacac |
19172602 |
T |
|
| Q |
293 |
actcaagaacaatcacctcccattactccgtcgttctatctccggcgcctccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172601 |
actcaagaacaatcacctcccattactccgtcgttctatctccggcgactccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaa |
19172502 |
T |
|
| Q |
393 |
tcttactaccacaccctcgacgcagctgcaaccacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatct |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172501 |
tcttactaccacaccctcgacgcagctgcaatcacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatct |
19172402 |
T |
|
| Q |
493 |
ctgacctccatcctttcatcttcaccaatcttgctcgttc |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172401 |
ctgacctccatcctttcatcttcaccaatcttgctcgttc |
19172362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 19172859 - 19172735
Alignment:
| Q |
18 |
cttttctgttagttcagtttcacattttctgttataaccaactttgttcccattcattt-tatacatatatattgatcagaaccgtgtgaatcacacaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172859 |
cttttctgttagttcagtttcacattttctgttataaccaactttgttcccattcatttatacatatatatattgatcagaaccgtgtgaatcacacaaa |
19172760 |
T |
|
| Q |
117 |
caaaaacagttataactcaattctg |
141 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
19172759 |
caaaaacagttatcactcaattctg |
19172735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19177956 - 19177901
Alignment:
| Q |
17 |
acttttctgttagttcagtttcacattttctgttataaccaactttgttcccattca |
73 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19177956 |
acttttctgttagttca-tttcacattttctgttataaccaactttgttcccattca |
19177901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University