View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_30 (Length: 246)
Name: NF15495_low_30
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40578310 - 40578080
Alignment:
| Q |
1 |
aagaaactgagaaaccaccgacagaagaagagaaaaaaccggaggaatctaaggaagttacaccgccagaaattgtgcttaaagtcttcatgcattgtga |
100 |
Q |
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| T |
40578310 |
aagaaactgagaaaccaccgacagaagaagagaaaaaaccggaggaatctaaggaagttacaccgcgagaaattgtgcttaaagtcttcatgcattgtga |
40578211 |
T |
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| Q |
101 |
aggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggtaaagagttttgcttttatttaccnnnnnnnnnngtct----gatatttttgtgt |
196 |
Q |
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| T |
40578210 |
aggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggtaaagagttttgcttttatttaccttttttttttttctttccgatatttttgtgt |
40578111 |
T |
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| Q |
197 |
taatgattaataatttgtgatggatttttca |
227 |
Q |
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| T |
40578110 |
taatgattaataatttgtgatggatttttca |
40578080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 45386718 - 45386659
Alignment:
| Q |
87 |
ttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
146 |
Q |
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| T |
45386718 |
ttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggt |
45386659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 45391107 - 45391028
Alignment:
| Q |
67 |
cagaaattgtgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
146 |
Q |
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| T |
45391107 |
cagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
45391028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 734715 - 734636
Alignment:
| Q |
67 |
cagaaattgtgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
146 |
Q |
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|||| ||| |||| ||||| ||||||||||||||| | |||||||| ||||||||||| || | |||| |||||||||| |
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| T |
734715 |
cagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
734636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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