View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_33 (Length: 238)
Name: NF15495_low_33
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 52046250 - 52046465
Alignment:
| Q |
9 |
ccaagaatatcacaacttccaagacagaaagagctaatatcttctttacgcccttatcacgcagctcttgtaggtgaaagttacttgggaaggagaaggc |
108 |
Q |
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| T |
52046250 |
ccaacaataccacaacttccaagacagaaagagctaatatcttctttacgcccttatcacgcagctcttgtaggtgaaagttacttgggaaggagaaggc |
52046349 |
T |
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| Q |
109 |
cagtgtatgaatgcacagaagtgcaggtgtgcccttaatgaattcatcattattaactacccatattttcaaactgttatcaaacatgtctagatatttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52046350 |
cagtgtatgaatgcacagaagtgcaggtgtgcccttaatgaattcatcattattaactacccatattttcaaactgttatcaaacatgtctagatatttt |
52046449 |
T |
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| Q |
209 |
catctgtagttcttac |
224 |
Q |
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|||||||||||||||| |
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| T |
52046450 |
catctgtagttcttac |
52046465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 18212018 - 18211894
Alignment:
| Q |
21 |
caacttccaagacagaaagagctaatatcttctttacgcccttatcacgcagctcttgtaggtgaaagttacttgggaaggagaaggccagtgtatgaat |
120 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||| ||| || |||| || || |||||||||||||| ||||||||||||||||| |||| |
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| T |
18212018 |
caactgccaagacagaaagagctaatgtcttctttacgcccttttcattcaactctcgtcggagaaagttacttgggtaggagaaggccagtgtacgaat |
18211919 |
T |
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| Q |
121 |
gcacagaagtgcaggtgtgccctta |
145 |
Q |
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|||| |||||||||||||||||||| |
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| T |
18211918 |
gcactgaagtgcaggtgtgccctta |
18211894 |
T |
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