View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15495_low_37 (Length: 227)
Name: NF15495_low_37
Description: NF15495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15495_low_37 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 5304895 - 5304675
Alignment:
| Q |
7 |
gtttataattttatgttgtgggggtaaaattatatataaatttgcaatattaaaaatataacatgatttttcaagtataaatatacatgtcacaaatttt |
106 |
Q |
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| T |
5304895 |
gtttataattttatgttgtgggggtaaaattatatataaatttgcaatattaaaaatataacatgatttttcaagtataaatatacatgtcacaaatttt |
5304796 |
T |
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| Q |
107 |
ctctatattcattttattgaaggtaattatatttgagacaatgacatacactagatgtaaacattcttacagagtgagatttaaattttgatttgtcaag |
206 |
Q |
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| T |
5304795 |
ctctatattcatttcatcgaaggtaattatatttgagacagtgacatacactaaatgtaaacattcttacagagtgagatttaaattttgatttgtcaag |
5304696 |
T |
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| Q |
207 |
ttgtgaagatttaatttaatt |
227 |
Q |
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| T |
5304695 |
ttctgaagatttaacttaatt |
5304675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 54730514 - 54730294
Alignment:
| Q |
7 |
gtttataattttatgttgtgggggtaaaattatatataaatttgcaatattaaaaatataacatgatttttcaagtataaatatacatgtcacaaatttt |
106 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54730514 |
gtttataattttatgtcgtgggggtaaaattatatataaatttgcaatattaaaaatataacatgatttttcaagtataaatatacatgtcacaaatttt |
54730415 |
T |
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| Q |
107 |
ctctatattcattttattgaaggtaattatatttgagacaatgacatacactagatgtaaacattcttacagagtgagatttaaattttgatttgtcaag |
206 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
54730414 |
ctctatattcatttcatcgaaggtaattatatttgagacaatgacatacactaaatgtaaacattcttagagagtgaaatttatattttgatttgtcaag |
54730315 |
T |
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| Q |
207 |
ttgtgaagatttaatttaatt |
227 |
Q |
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|||||||||||||| |||||| |
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| T |
54730314 |
ttgtgaagatttaacttaatt |
54730294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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