View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15496_high_2 (Length: 267)
Name: NF15496_high_2
Description: NF15496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15496_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 6842606 - 6842365
Alignment:
| Q |
10 |
aagaatattaacaatattctaatctattagcttagacaaattaattgacaataattctatctaatatttaagtactacaatataaaaagaataaattctc |
109 |
Q |
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| T |
6842606 |
aagaaaattaacaatattctaatctattagcttagacaaattaattgacaataattctatctaatatttaagtactactatataaaaagaataaattatc |
6842507 |
T |
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| Q |
110 |
acctgttctataacatatgatggtttgtgttgtgtatcaggaataaaagcagctaagaaaattccaacttcaattttttcaggaaatttttccattgcaa |
209 |
Q |
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| T |
6842506 |
acctgttctagaacatatgatggtttgtgttgtgtatcaggaataaaagcagctaagaaaattccaacttcaattttttcaggaaatttttccattgcaa |
6842407 |
T |
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| Q |
210 |
gagctatactcattcctccaaagctatgtccaacaagaacca |
251 |
Q |
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| T |
6842406 |
gagctatactcattcctccaaagctatgtccaacaagaacca |
6842365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 6833285 - 6833140
Alignment:
| Q |
100 |
ataaattctcacctgttctataacatatgatggtttgtgttgtgtatcaggaataaaagcagctaagaaaattccaacttcaattttttcaggaaatttt |
199 |
Q |
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| T |
6833285 |
ataaattctcaccagttgtaggacataagatggtttgtgttcggtatcaggagtaaaagcagctaagaaaattccaactaaaatttttgtaggaaaattt |
6833186 |
T |
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| Q |
200 |
tccattgcaagagctatactcattcctccaaagctatgtccaacaa |
245 |
Q |
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| T |
6833185 |
tccattgcaagggctatactcattcctccaaagctatgtcccacaa |
6833140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 12532593 - 12532646
Alignment:
| Q |
198 |
tttccattgcaagagctatactcattcctccaaagctatgtccaacaagaacca |
251 |
Q |
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| T |
12532593 |
tttccattgcaagagctatactcattcctccaaagctatgtccaacaagaacca |
12532646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 33760428 - 33760522
Alignment:
| Q |
154 |
aaaagcagctaagaaaattccaacttcaattttttcaggaaatttttccattgcaagagctatactcattcctccaaagctatgtccaacaagaa |
248 |
Q |
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| T |
33760428 |
aaaagcagttaagaaaacaccaacagcaaccttttctggaaattgttccattgcaagagctatgctaagtcctccaagactatgacccacaagaa |
33760522 |
T |
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