View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15497_low_1 (Length: 321)
Name: NF15497_low_1
Description: NF15497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15497_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 23335019 - 23334727
Alignment:
| Q |
13 |
aatatttggatgagaatgacgtcataaccgaaacaagaaacactcctcacattagcaaacattcttcaactttagaagagggtaactgaagagggtggtt |
112 |
Q |
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| T |
23335019 |
aatatttggatgagaacgacgtcataaccgaaacgagaaacactcctcacattagcaaacattcttcaactttagaagagggtaactaaagagggtgatt |
23334920 |
T |
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| Q |
113 |
gtcgatctgggttaacatgatatccgaatcaagtagaaccaattcaatatgtaaaaggattaggtttgttcatatcattgattcagtgtatattcttgtg |
212 |
Q |
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| T |
23334919 |
gtcgatctgggttaacatgatatccgaatcaagtagaatcaattcaatatgtaaaaggattaggtttgttcataacattgattcagcttatattcttgtg |
23334820 |
T |
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| Q |
213 |
aaccatatatgtttgattagggtatggtgttgaatacttaaaccaactttcaatattgttggtgattttaaatttataacatcttgatgaaaa |
305 |
Q |
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| T |
23334819 |
aaccatatatgtttgattagggtatggtgttgaatacttaaaccaactttcaatattgttggtgattttaaatttattacatcttgatgaaaa |
23334727 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 30825815 - 30825857
Alignment:
| Q |
48 |
agaaacactcctcacattagcaaacattcttcaactttagaag |
90 |
Q |
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| T |
30825815 |
agaaacactcctcacataggcaaagattcttcaactttagaag |
30825857 |
T |
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