View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15498_high_1 (Length: 455)
Name: NF15498_high_1
Description: NF15498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15498_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 8843511 - 8843089
Alignment:
| Q |
17 |
tatgatttttgactaaatatacaatttttt-gagtggttataacaagctttagaaaaatgtgaatttgaaaaaatcacaagtagcttagttaagaattat |
115 |
Q |
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|||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| || |
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| T |
8843511 |
tatgatttttaactaaaaatacaatttttttgtgtggttataacaagctttagaaaaatgtgaatttgaaaaaatcacgagtagtttagttaaaaatcat |
8843412 |
T |
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| Q |
116 |
atggaaagcaactaagaaaatgcagttaaannnnnnnctttcataaaaggattaaactaaccagcttcccaaaaagactttgtctagagttaagttcaat |
215 |
Q |
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| T |
8843411 |
acgaaaaacaactaagaaaatgcagctaaatttttttctatcataaaaggattaaactaaccagcttcccaaaaagactttgtctagagttaagtttaat |
8843312 |
T |
|
| Q |
216 |
gttggtccaaacgacacaccaccagcatccatcacaaagtacttagaggctggcgcgaggctgtagagcctctgaggcgatatatgcccttgttgatctt |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8843311 |
gttggttcaaacgacacaccaccagcatccatcacaaagtacttagaggctggcgcgaggctgtagagcctctgaggcgatatatgcccttgttgatctt |
8843212 |
T |
|
| Q |
316 |
cagatagcgagcaatataacatagagttactagacaataatctcagaagacggtccaacatttcaggtgcgtccgggttctttgatccaatctcagttga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8843211 |
cagatagcgagcaatataacatagagttactagacaataatctcagaagacggtccaacatttcaggtgcgtccgggttctttgatccaatctaagttga |
8843112 |
T |
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| Q |
416 |
gatgtcatttgcagagagcatga |
438 |
Q |
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| T |
8843111 |
gatgtcatttgcagagagcatga |
8843089 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 23801144 - 23801227
Alignment:
| Q |
28 |
actaaatatacaattttttgagtggttataacaagcttta-gaaaaatgtgaatttgaaaaaatcacaagtagcttagttaagaat |
112 |
Q |
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|||||| |||||||||||| || |||||||||| |||| ||||| ||| |||||||| |||||| |||||| |||||||||||| |
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| T |
23801144 |
actaaaaatacaattttttaag--gttataacaaattttaagaaaattgtaaatttgaataaatcataagtagtttagttaagaat |
23801227 |
T |
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