View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15499_high_11 (Length: 220)
Name: NF15499_high_11
Description: NF15499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15499_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 14597424 - 14597606
Alignment:
| Q |
17 |
cacagacttcatccgtacattcatgtttaggatcttttgtgtcccaatcacctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatcc |
116 |
Q |
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| T |
14597424 |
cacagacttcatccgtacattcatgtttaggatcttttgtgtcccaatcacctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatcc |
14597523 |
T |
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| Q |
117 |
ggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagc |
199 |
Q |
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| T |
14597524 |
ggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagc |
14597606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 14611038 - 14610899
Alignment:
| Q |
60 |
ccaatcacctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctc |
159 |
Q |
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| T |
14611038 |
ccaatcacccgtgggagggtcaaatccgtacaatgcaaatctcctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctc |
14610939 |
T |
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| Q |
160 |
atgtttccgtcaaagaatacagtgttgtgattggcatagc |
199 |
Q |
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| T |
14610938 |
atgttcccgtcaaagaacacggtgttgtgattggcatagc |
14610899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 47919349 - 47919269
Alignment:
| Q |
117 |
ggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcata |
197 |
Q |
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| T |
47919349 |
ggttcctacatagaacgggccttgaagtccatcaagggctctcatgttaacatcaaagaagacagtgttgtgattagcata |
47919269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 29917837 - 29917961
Alignment:
| Q |
73 |
ggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaa |
172 |
Q |
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| T |
29917837 |
ggaggatcaaaaccataaagagcaaaccttctaaacagacagccggttcctacatagactgggccttgaagtccatcaagggctctcatgttaacatcaa |
29917936 |
T |
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| Q |
173 |
agaatacagtgttgtgattggcata |
197 |
Q |
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| T |
29917937 |
agaagacggtgttgtgattagcata |
29917961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 15418044 - 15418138
Alignment:
| Q |
73 |
ggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttcc |
167 |
Q |
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| T |
15418044 |
ggaggttcaaatccatagagtgcatatctcctaaacatgcaaccggttccgacatacattggaccttgtagaccatccaatgctctcatatttcc |
15418138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 12193221 - 12193307
Alignment:
| Q |
111 |
gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcata |
197 |
Q |
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| T |
12193221 |
gcatccagtaccaacataaacaggaccctgaataccatcgagagctctcatattgacatcaaagaagacagtgttatgattggcata |
12193307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 41490529 - 41490615
Alignment:
| Q |
111 |
gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcata |
197 |
Q |
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| T |
41490529 |
gcatccggtaccaacatatacaggaccctgaataccatcgagagctcgcatattgacatcaaagaagacagtgttgtgattggcata |
41490615 |
T |
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