View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15499_high_4 (Length: 361)

Name: NF15499_high_4
Description: NF15499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15499_high_4
NF15499_high_4
[»] chr1 (9 HSPs)
chr1 (20-350)||(36754794-36755124)
chr1 (154-266)||(20816895-20817006)
chr1 (173-270)||(17048058-17048155)
chr1 (183-267)||(34488588-34488672)
chr1 (176-270)||(11833671-11833765)
chr1 (152-266)||(22669024-22669138)
chr1 (200-251)||(10751556-10751607)
chr1 (157-251)||(1634920-1635014)
chr1 (229-281)||(13258054-13258106)
[»] chr8 (15 HSPs)
chr8 (108-270)||(19342158-19342320)
chr8 (108-270)||(19371656-19371818)
chr8 (152-258)||(12843488-12843594)
chr8 (156-270)||(22881699-22881813)
chr8 (177-268)||(25809562-25809653)
chr8 (117-227)||(10650312-10650422)
chr8 (168-270)||(20707146-20707248)
chr8 (176-267)||(28458049-28458138)
chr8 (200-251)||(24502368-24502419)
chr8 (162-239)||(17872012-17872089)
chr8 (194-267)||(15610249-15610322)
chr8 (150-270)||(5346072-5346191)
chr8 (210-266)||(10516419-10516475)
chr8 (194-258)||(15748418-15748482)
chr8 (198-270)||(15753132-15753204)
[»] chr3 (7 HSPs)
chr3 (112-316)||(23528299-23528503)
chr3 (162-266)||(4596840-4596944)
chr3 (168-251)||(9796540-9796623)
chr3 (200-273)||(9828934-9829006)
chr3 (194-262)||(2906526-2906594)
chr3 (162-270)||(4698583-4698691)
chr3 (168-244)||(17034132-17034208)
[»] chr2 (13 HSPs)
chr2 (121-312)||(16748014-16748203)
chr2 (156-270)||(24386337-24386451)
chr2 (156-251)||(27483804-27483899)
chr2 (152-249)||(21538453-21538550)
chr2 (147-245)||(12061203-12061302)
chr2 (200-270)||(13896937-13897006)
chr2 (200-270)||(14037554-14037623)
chr2 (176-266)||(18115082-18115172)
chr2 (152-238)||(22108280-22108366)
chr2 (181-267)||(35511828-35511914)
chr2 (157-190)||(24109118-24109151)
chr2 (162-255)||(31851192-31851285)
chr2 (168-244)||(22311211-22311287)
[»] chr7 (16 HSPs)
chr7 (120-270)||(11739526-11739676)
chr7 (153-265)||(39199758-39199872)
chr7 (142-259)||(23662258-23662375)
chr7 (195-262)||(3316119-3316186)
chr7 (152-267)||(6414881-6414996)
chr7 (152-262)||(23183444-23183554)
chr7 (197-262)||(7681513-7681578)
chr7 (142-259)||(23655457-23655574)
chr7 (197-262)||(7666254-7666319)
chr7 (178-235)||(19650724-19650781)
chr7 (150-270)||(7144564-7144683)
chr7 (152-259)||(32561883-32561988)
chr7 (176-270)||(1675008-1675102)
chr7 (166-244)||(1783369-1783447)
chr7 (174-255)||(4122590-4122671)
chr7 (181-270)||(39227386-39227475)
[»] chr4 (11 HSPs)
chr4 (112-267)||(35150106-35150261)
chr4 (162-270)||(24715650-24715758)
chr4 (180-270)||(12285764-12285854)
chr4 (141-258)||(9736410-9736527)
chr4 (162-237)||(9883032-9883107)
chr4 (117-236)||(19601508-19601627)
chr4 (199-270)||(20748672-20748743)
chr4 (176-262)||(7221262-7221347)
chr4 (152-223)||(23692967-23693038)
chr4 (221-262)||(16300692-16300733)
chr4 (230-262)||(7224279-7224311)
[»] chr5 (8 HSPs)
chr5 (207-273)||(24558953-24559019)
chr5 (207-273)||(24599985-24600051)
chr5 (180-270)||(11848263-11848353)
chr5 (150-236)||(18807449-18807535)
chr5 (119-220)||(17771693-17771794)
chr5 (152-221)||(16687129-16687198)
chr5 (41-97)||(15990752-15990808)
chr5 (214-258)||(16686436-16686480)
[»] chr6 (3 HSPs)
chr6 (176-270)||(14761285-14761378)
chr6 (20-237)||(12869801-12870028)
chr6 (117-190)||(33546579-33546652)
[»] scaffold0466 (1 HSPs)
scaffold0466 (162-270)||(4317-4425)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 36755124 - 36754794
Alignment:
Q  20 gatgcatcttctaattagagctttgaattttgttgaactttcttcatatcatagttttagtcatcatagcttcttcttgattaccaaatgcattcaaagc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36755124 gatgcatcttctaattagagctttgaattttgttgaactttcttcatatcatagttttagtcatcatagcttcttcttgagtaccaaatgcattcaaagc 36755025  T
Q  120 ttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755024 ttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcata 36754925  T
Q  220 cattattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctccttttcgatggttacaaacttatgtattttaaaaaa 319  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  36754924 cattgttatcatcaaaactttagagatattgttctaaaacccactttggttaaaaaatcccccccttttcgatggttacaaacttatgtattttaaaaaa 36754825  T
Q  320 gttgctaaatgttgtctagcatggaattcat 350  Q
    |||| | ||||||||||||||||||||||||    
T  36754824 gttgatgaatgttgtctagcatggaattcat 36754794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 20817006 - 20816895
Alignment:
Q  154 tcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttc 253  Q
    ||||||| |||||||||| |||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| ||| ||||| ||||||| |||||||    
T  20817006 tcagaatttaattttatggtcctgcacacttcaacacacatta-agtattcaattgttctttcatacattgttatcattaaaacattagagacattgttc 20816908  T
Q  254 taaaacccacttt 266  Q
    |||||||||||||    
T  20816907 taaaacccacttt 20816895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 17048155 - 17048058
Alignment:
Q  173 tcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    |||||||||||||||||| | ||| | |||||||||||| ||||||||||| ||| || |||||| ||||| ||||||||||||||| ||||||||||    
T  17048155 tcctgcacacttgaacacacattaaaatatccaattgttatttcatacatttttatcaacaaaaccttagatatattgttctaaaactcactttggtt 17048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 34488588 - 34488672
Alignment:
Q  183 ttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 267  Q
    |||||||| | |||||||||| |||||||||||||||| |||||| |||||||||| |||| | |||||||||||||||||||||    
T  34488588 ttgaacacacattagagtatcaaattgttctttcataccttattatcatcaaaactctagatacattgttctaaaacccactttg 34488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 11833671 - 11833765
Alignment:
Q  176 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    |||||| |||||||| | ||||||| || |||| || |||||||| |||||| ||| ||||||||||||| |||||| |||||| ||||||||||    
T  11833671 tgcacaattgaacacacattagagtttcaaattattttttcatacgttattatcattaaaactttagagacattgttttaaaactcactttggtt 11833765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 22669138 - 22669024
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    ||||| ||| ||||| |||| |||||||||||||||||    |||||||| | |||| |||||||||||||| ||| ||| ||||| ||  | | ||| |    
T  22669138 agtcaaaatttaattatatggtcctgcacacttgaacaaatattagagtaccaaattcttctttcatacattgttatcataaaaaccttgaaaacattat 22669039  T
Q  252 tctaaaacccacttt 266  Q
    |||||||||||||||    
T  22669038 tctaaaacccacttt 22669024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 10751556 - 10751607
Alignment:
Q  200 tatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    |||||||||||||||| |||| || ||| ||||||||||||||||| |||||    
T  10751556 tatccaattgttctttaatactttgttatcatcaaaactttagagacattgt 10751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 1635014 - 1634920
Alignment:
Q  157 gaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    |||| ||||| |||| ||||||||||||||||||   ||||  |||||||||||||  | |||| |||||| |||||||||| | |||| |||||    
T  1635014 gaatttaattctatgctcctgcacacttgaacacatattagcctatccaattgttcacttataccttattatcatcaaaactctggagacattgt 1634920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 13258106 - 13258054
Alignment:
Q  229 catcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcc 281  Q
    |||||||||| |||||| |||||||||||  ||||||||||| || |||||||    
T  13258106 catcaaaactctagagacattgttctaaagtccactttggttcaacaatctcc 13258054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 108 - 270
Target Start/End: Complemental strand, 19342320 - 19342158
Alignment:
Q  108 tgcattcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaat 207  Q
    ||||||||||  ||||| ||| |||||||||||||||| |||||||| ||||| |||||||||| | |||||||||||||||| | || | |||||||||    
T  19342320 tgcattcaaattttggtatttcagaaccaacaagttgacttcagagttagaatttaattttatggtactgcacacttgaacacacatttgtgtatccaat 19342221  T
Q  208 tgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  19342220 tgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggtt 19342158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 108 - 270
Target Start/End: Complemental strand, 19371818 - 19371656
Alignment:
Q  108 tgcattcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaat 207  Q
    ||||||||||  ||||||||| | |||||||| ||||| |||||||| ||||| ||||||| || | |||||||||||||||| | || | |||||||||    
T  19371818 tgcattcaaattttggtgtttcataaccaacaggttgacttcagagttagaatttaattttgtggtactgcacacttgaacacacatttgtgtatccaat 19371719  T
Q  208 tgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  19371718 tgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggtt 19371656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 12843488 - 12843594
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    ||||||||| ||||| |||| |||||||||||||||||| | |||| |||||||||| |||||||||||||||||| |||||||||| |||||| | |||    
T  12843488 agtcagaatttaattatatggtcctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaactctagagacactgt 12843587  T
Q  252 tctaaaa 258  Q
    |||||||    
T  12843588 tctaaaa 12843594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 22881699 - 22881813
Alignment:
Q  156 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 255  Q
    ||||| ||||| |||| || | |||||| |||||| | |||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||    
T  22881699 agaatttaattatatggtcatacacactagaacacacattagagtatccaattgttctttcatatattattatcatcaaaaccttagagacattgttcta 22881798  T
Q  256 aaacccactttggtt 270  Q
    |||| ||||||||||    
T  22881799 aaactcactttggtt 22881813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 25809562 - 25809653
Alignment:
Q  177 gcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttgg 268  Q
    ||||||| |||||| | ||||||||||||||| |||||| |||| || ||| |||||||||  || ||| ||||||||||||||||||||||    
T  25809562 gcacactcgaacacacattagagtatccaattattcttttatactttgttaacatcaaaaccatatagacattgttctaaaacccactttgg 25809653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 10650312 - 10650422
Alignment:
Q  117 agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttc 216  Q
    |||||||||||| | |||||||||||||| |||| ||||| ||| |||||||||| | | |||||  ||||||| | |||||| ||||||| ||||||||    
T  10650312 agcttggtgtttcaaaaccaacaagttgacttcaaagtcataatttaattttatggttcggcacatatgaacacacattagagcatccaatcgttctttc 10650411  T
Q  217 atacattatta 227  Q
    ||  |||||||    
T  10650412 attgattatta 10650422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 20707146 - 20707248
Alignment:
Q  168 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 267  Q
    |||| |||| ||||||||||||| | |||||||||| ||||||||||||| ||||| ||| |||  |||| ||| ||| |||||| |||||| |||||||    
T  20707146 tatggtcctacacacttgaacacacattagagtatctaattgttctttcaaacattgttatcatttaaaccttatagacattgttttaaaactcactttg 20707245  T
Q  268 gtt 270  Q
    |||    
T  20707246 gtt 20707248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 28458138 - 28458049
Alignment:
Q  176 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 267  Q
    ||||||||| ||||| | ||||||||  ||||| |||||||| ||||| ||||||||||| | ||| || ||||||||||||| ||||||||    
T  28458138 tgcacacttaaacacacattagagta--caattattctttcacacattgttaccatcaaacccttataggtattgttctaaaatccactttg 28458049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 24502419 - 24502368
Alignment:
Q  200 tatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    |||||||||||||||| |||| |||||| |||||||||||||||| ||||||    
T  24502419 tatccaattgttctttaatactttattatcatcaaaactttagaggtattgt 24502368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 17872089 - 17872012
Alignment:
Q  162 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactt 239  Q
    ||||| |||||||||||| ||||||||||   ||||  |||| ||||||||||| ||||||| ||| |||||||||||    
T  17872089 taattctatgatcctgcatacttgaacacaaattagcatatcaaattgttcttttatacattgttatcatcaaaactt 17872012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 15610249 - 15610322
Alignment:
Q  194 ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 267  Q
    |||||||| | | |||||||| || ||||| |||  |||||||| ||| ||| |||||||||||||||||||||    
T  15610249 ttagagtaacaagttgttcttacacacatttttattatcaaaaccttatagacattgttctaaaacccactttg 15610322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 270
Target Start/End: Original strand, 5346072 - 5346191
Alignment:
Q  150 agagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatatt 249  Q
    ||||||||||| |||||||||| |   ||| |||||||||| ||||||  |||||||||| || || |||||||  ||  ||||| ||||  ||||||||    
T  5346072 agagtcagaatttaattttatggttacgcatacttgaacacacgttagcatatccaattgctcctttatacattgatataatcaagacttccgagatatt 5346171  T
Q  250 gttctaaaacccactttggtt 270  Q
    |||| ||||| || |||||||    
T  5346172 gttc-aaaactcattttggtt 5346191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 10516475 - 10516419
Alignment:
Q  210 ttctttcatacattattaccatcaaaactttagagatattgttctaaaacccacttt 266  Q
    |||||||||||||| ||| ||||||||  ||| | | ||||||||||||||||||||    
T  10516475 ttctttcatacattgttatcatcaaaatcttataaacattgttctaaaacccacttt 10516419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 15748418 - 15748482
Alignment:
Q  194 ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaa 258  Q
    ||||||||  |||||||||||||||||||| ||| ||| ||||  |||||||  |||||||||||    
T  15748418 ttagagtaggcaattgttctttcatacattgttatcataaaaatcttagagactttgttctaaaa 15748482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 15753132 - 15753204
Alignment:
Q  198 agtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    |||| |||||||||||| |||||||| ||| ||| ||||  |||||||  ||||||||||| ||| |||||||    
T  15753132 agtacccaattgttcttacatacattgttatcataaaaatcttagagactttgttctaaaatccaatttggtt 15753204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 316
Target Start/End: Complemental strand, 23528503 - 23528299
Alignment:
Q  112 ttcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgtt 211  Q
    |||| |||||||||| | | |||||||||||||| |||||| ||| ||| |||||||||| ||||||||| |||| ||    ||| |||| |||||||||    
T  23528503 ttcagagcttggtgtatcaaaaccaacaagttgatttcagattcaaaatttaattttatggtcctgcaca-ttgagcaaaaattatagtacccaattgtt 23528405  T
Q  212 ctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctcc-ttttcgatggttacaaacttatgtat 310  Q
    |||||| ||||| ||| ||||||||| ||||||| ||||||||||||| |||||||||| || |||||| ||| |||| |||| | | ||||||||||||    
T  23528404 ctttcagacattgttatcatcaaaaccttagagacattgttctaaaactcactttggttcaacaatctcttccttttttgatgatgagaaacttatgtat 23528305  T
Q  311 tttaaa 316  Q
     |||||    
T  23528304 cttaaa 23528299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 4596944 - 4596840
Alignment:
Q  162 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 261  Q
    |||||||||| |  ||||||| ||||||| | ||||||||||||| | |||||| ||| ||||| | |||  |||||||| ||| ||| |||||||||||    
T  4596944 taattttatggttttgcacacctgaacacacattagagtatccaaatattcttttatatattatcatcatttaaactttaaagacattattctaaaaccc 4596845  T
Q  262 acttt 266  Q
    |||||    
T  4596844 acttt 4596840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 9796540 - 9796623
Alignment:
Q  168 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    ||||||||||||||||||||||    |||   |||||||||||||||| |||| |||||| ||||||||||| ||||| |||||    
T  9796540 tatgatcctgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatcaaaacttcagagaaattgt 9796623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 9829006 - 9828934
Alignment:
Q  200 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 273  Q
    |||| ||||||||||| ||||||| ||| |||||||||||||| || ||||||| ||||| || ||||||||||    
T  9829006 tatctaattgttcttttatacattgttatcatcaaaactttagggacattgttc-aaaactcattttggttaaa 9828934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 2906526 - 2906594
Alignment:
Q  194 ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 262  Q
    ||||||||||||||| |||||  ||||||| ||| ||||||||||||||||| ||| || |||| ||||    
T  2906526 ttagagtatccaattattcttctatacattgttatcatcaaaactttagagacattattgtaaatccca 2906594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 4698691 - 4698583
Alignment:
Q  162 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 261  Q
    |||||||||| |  ||||||||||||||  | ||||||||| |||||||||||| | ||| |  || ||| || |||||| ||| ||| |||||||| ||    
T  4698691 taattttatggttttgcacacttgaacatacattagagtattcaattgttcttttacacaatgctatcattaatactttaaagacattattctaaaatcc 4698592  T
Q  262 actttggtt 270  Q
    || ||||||    
T  4698591 accttggtt 4698583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 17034208 - 17034132
Alignment:
Q  168 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagag 244  Q
    ||||||| |||||||||||||| |  |||   |||||||||||||||  ||||||| ||| ||||||||||| ||||    
T  17034208 tatgatcgtgcacacttgaacatgtattaacatatccaattgttcttcaatacattgttatcatcaaaacttcagag 17034132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 312
Target Start/End: Complemental strand, 16748203 - 16748014
Alignment:
Q  121 tggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatac 220  Q
    |||||||| |||||||| || |||| |||| ||||| ||| | |||||||| | || |||| |||||||| | ||||||||| ||| |||||||||||||    
T  16748203 tggtgtttcagaaccaataaattgatttca-agtcaaaatttgattttatggttctacacatttgaacacacattagagtattcaactgttctttcatac 16748105  T
Q  221 attattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctccttttcgatggttacaaacttatgtattt 312  Q
    ||||||| ||||||||  ||||| | |||||||||||||||| ||||||| |  ||| ||||||||||  ||| | ||||||||||| ||||    
T  16748104 attattatcatcaaaatcttagaaacattgttctaaaaccca-tttggttcatcaatttcctccttttttatgataacaaacttatggattt 16748014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 24386337 - 24386451
Alignment:
Q  156 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 255  Q
    ||||| ||||| |||| || ||||||||||||||| | ||| | ||   ||||||||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  24386337 agaatttaattctatggtcatgcacacttgaacacacattaaattactaaattgttctttcatacattattatcataaaaaccttagggatattgttcta 24386436  T
Q  256 aaacccactttggtt 270  Q
    |||||||||||||||    
T  24386437 aaacccactttggtt 24386451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 27483899 - 27483804
Alignment:
Q  156 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    ||||| |||||||||| |||||||||||||||||| | |||   |||| ||||||||||||| || || |||  |||||||||| ||||| |||||    
T  27483899 agaatttaattttatggtcctgcacacttgaacacacattaatatatcaaattgttctttcaaactttgttatgatcaaaacttcagagacattgt 27483804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 21538550 - 21538453
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatatt 249  Q
    ||||||||| ||||| |||| || | | || |||||||| |  ||||||| | ||||||||||||||||||| ||| ||||||||||| | |||||||    
T  21538550 agtcagaatttaattatatggtctttcccaattgaacacacaatagagtaccaaattgttctttcatacattgttatcatcaaaacttaaaagatatt 21538453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 12061203 - 12061302
Alignment:
Q  147 ttcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttc-tttcatacattattaccatcaaaactttagaga 245  Q
    |||||||||||||  ||| |||||||| |||||||||| ||| | | |||   |||| |||||||| |||||||| |||||| ||||||||||| |||||    
T  12061203 ttcagagtcagaaattaagtttatgattctgcacacttaaactcacattaacatatctaattgttcttttcatactttattatcatcaaaacttcagaga 12061302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 13896937 - 13897006
Alignment:
Q  200 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    ||||||||| |||||||| || || ||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  13896937 tatccaatttttctttcaaactttgttatcatcaaaacttaagagacattgtt-taaaacccattttggtt 13897006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 14037554 - 14037623
Alignment:
Q  200 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    ||||||||| |||||||| || || ||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  14037554 tatccaatttttctttcaaactttgttatcatcaaaacttaagagacattgtt-taaaacccattttggtt 14037623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 18115082 - 18115172
Alignment:
Q  176 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccacttt 266  Q
    ||||||||||| ||| | |||||||| |||||| |||||| |||| || ||| ||||||||| ||||| | |||||  |||| ||||||||    
T  18115082 tgcacacttgagcacacattagagtacccaattattcttttatacgttgttatcatcaaaaccttagaaaaattgtgttaaaccccacttt 18115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 22108366 - 22108280
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaact 238  Q
    ||||||| | ||||| ||||||| ||||||||||||||| | ||| | |||  ||||| ||||||| | ||||||| ||||||||||    
T  22108366 agtcagattttaattatatgatcatgcacacttgaacacacattataatataaaattgctctttcacatattattatcatcaaaact 22108280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 35511914 - 35511828
Alignment:
Q  181 acttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 267  Q
    |||||||||  | |||||||||| |||| |||||| ||||||  ||| ||||||||| ||| | | ||||||||||||| |||||||    
T  35511914 acttgaacatacattagagtatcaaattattcttttatacatcgttatcatcaaaacattaaaaacattgttctaaaactcactttg 35511828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 24109151 - 24109118
Alignment:
Q  157 gaatataattttatgatcctgcacacttgaacac 190  Q
    |||| |||||||||||||||||||||||||||||    
T  24109151 gaatttaattttatgatcctgcacacttgaacac 24109118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 31851285 - 31851192
Alignment:
Q  162 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 255  Q
    ||||| ||||||| ||||||||||||||  | ||||| |||| ||||||||||  ||||| | ||  || |||||| ||||| |||||||||||    
T  31851285 taattatatgatcatgcacacttgaacaaactttagaatatctaattgttcttctatacactgttgtcaccaaaaccttagaaatattgttcta 31851192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 22311287 - 22311211
Alignment:
Q  168 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagag 244  Q
    ||||||||||||||||||||||    ||||  |||||||||||||||  |||| || ||| ||||||||| ||||||    
T  22311287 tatgatcctgcacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttagag 22311211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 120 - 270
Target Start/End: Complemental strand, 11739676 - 11739526
Alignment:
Q  120 ttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcata 219  Q
    ||||||||| ||||||||||||| || ||| |||||||||| ||||| |||| | |||||| |||||| ||  ||||||||| | |||||||||||||||    
T  11739676 ttggtgtttcagaaccaacaagtagacttctgagtcagaatttaattctatggtactgcacgcttgaatacatgttagagtacctaattgttctttcata 11739577  T
Q  220 cattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
      || ||| ||||||||| ||||| | |||||||||||||||  |||||||    
T  11739576 tgttgttatcatcaaaacattagaaacattgttctaaaaccctttttggtt 11739526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 39199872 - 39199758
Alignment:
Q  153 gtcagaatataattttatgatcctgcacacttgaacacgcg--ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattg 250  Q
    |||||||| ||||| |||| || |||| |||| |||||||   |||||||||| |||||||| |||||||||| |||  |||||||| |||||||||||     
T  39199872 gtcagaatttaattatatggtcatgcatacttaaacacgcacattagagtatcaaattgttcattcatacattgttattatcaaaaccttagagatatta 39199773  T
Q  251 ttctaaaacccactt 265  Q
    ||||||||| |||||    
T  39199772 ttctaaaactcactt 39199758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 259
Target Start/End: Original strand, 23662258 - 23662375
Alignment:
Q  142 ttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttta 241  Q
    |||| |||||||||||||| ||||| |||| ||||||| |||  ||||    |||| ||||||||||||||||| ||||||| | | ||||||||| |||    
T  23662258 ttgacttcagagtcagaatgtaattctatgttcctgcatactacaacaaaatttagggtatccaattgttcttttatacattgtcagcatcaaaacctta 23662357  T
Q  242 gagatattgttctaaaac 259  Q
    |||| ||| |||||||||    
T  23662358 gagacattattctaaaac 23662375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 3316119 - 3316186
Alignment:
Q  195 tagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 262  Q
    ||||||| ||||||||||||  ||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  3316119 tagagtacccaattgttcttctatacatttttatcatcaaaacattagagattttgttctaaaaccca 3316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 267
Target Start/End: Original strand, 6414881 - 6414996
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    ||||| ||| ||||| |||  |||||||||||||||  |   |||||||| |||||| |||||||||||||| ||| ||| |||| |||| ||| |||||    
T  6414881 agtcataatttaattatatcgtcctgcacacttgaatgcatattagagtacccaattattctttcatacattgttatcataaaaaatttaaagacattgt 6414980  T
Q  252 tctaaaacccactttg 267  Q
    |||| |||||||||||    
T  6414981 tctataacccactttg 6414996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 23183444 - 23183554
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    ||||| ||| ||||| |||| || ||||||||||||||| | ||||||| ||   ||||||||||||| ||||||| ||||| ||||| ||||| |||||    
T  23183444 agtcaaaatttaattatatggtcatgcacacttgaacacacattagagtgtcaggttgttctttcataaattattatcatcagaacttaagagacattgt 23183543  T
Q  252 tctaaaaccca 262  Q
     | ||||||||    
T  23183544 ccaaaaaccca 23183554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 7681578 - 7681513
Alignment:
Q  197 gagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 262  Q
    ||||| ||| ||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  7681578 gagtacccagttgttcttctatacattgttatcatcaaaaccttagagatattgttctaaaaccca 7681513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 259
Target Start/End: Original strand, 23655457 - 23655574
Alignment:
Q  142 ttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttta 241  Q
    |||| |||||||||||||| ||||| |||| |||| |||||  |||||  | |||||||| |||||| |||||  ||||||  ||| ||||||||| |||    
T  23655457 ttgacttcagagtcagaatttaattatatggtcctacacaccagaacaaactttagagtacccaatttttcttatatacatagttaacatcaaaacctta 23655556  T
Q  242 gagatattgttctaaaac 259  Q
    |||| ||| |||||||||    
T  23655557 gagacattattctaaaac 23655574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 7666319 - 7666254
Alignment:
Q  197 gagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 262  Q
    ||||| ||| ||||||||  ||||||| ||| ||||||||  ||||||||||||||||||||||||    
T  7666319 gagtacccagttgttcttctatacattgttatcatcaaaaacttagagatattgttctaaaaccca 7666254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 19650724 - 19650781
Alignment:
Q  178 cacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaa 235  Q
    ||||||||||||||| |||| ||| |||||| || ||||||||||||||| |||||||    
T  19650724 cacacttgaacacgcattagggtacccaatttttatttcatacattattatcatcaaa 19650781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 7144683 - 7144564
Alignment:
Q  150 agagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatatt 249  Q
    ||||||||||| ||||| |||| | ||||| |||||||||| | ||    |||||||||||||||||||| ||| ||  ||||||||||| ||||  |||    
T  7144683 agagtcagaatttaattatatggttctgcatacttgaacacacattgtcatatccaattgttctttcatatattgttctcatcaaaacttcagagtcatt 7144584  T
Q  250 gttctaaaacccactttggtt 270  Q
    ||| |||||| || |||||||    
T  7144583 gtt-taaaactcattttggtt 7144564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 32561988 - 32561883
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 251  Q
    ||||||||| ||||| |||| |||| || |||| ||||  | |||||||||  |||| || |||||||||| |||| ||||||||| ||||||| |||||    
T  32561988 agtcagaatttaattatatggtcctacatacttaaacatacattagagtattaaattatt-tttcatacat-attatcatcaaaaccttagagacattgt 32561891  T
Q  252 tctaaaac 259  Q
    ||||||||    
T  32561890 tctaaaac 32561883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 1675102 - 1675008
Alignment:
Q  176 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    ||||||||||||||  |  |||| |||||||||||||||  ||||||||||| ||||||||  ||||    ||| ||||||||| ||||||||||    
T  1675102 tgcacacttgaacaaacaatagaatatccaattgttcttctatacattattatcatcaaaatcttagtagcattattctaaaactcactttggtt 1675008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 1783369 - 1783447
Alignment:
Q  166 tttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagag 244  Q
    |||||||||||||||||||||||||   ||| | |||||||||||||||  | || || ||| |||||||||| |||||    
T  1783369 tttatgatcctgcacacttgaacacatattaaattatccaattgttcttcaaaactttgttatcatcaaaactctagag 1783447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 4122671 - 4122590
Alignment:
Q  174 cctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 255  Q
    |||||||||| |||||| |||||  |||  ||||||||||||  |||||| ||| ||| ||||  |||||||||||||||||    
T  4122671 cctgcacactggaacacacgttattgtactcaattgttcttttctacattgttatcattaaaatcttagagatattgttcta 4122590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 39227475 - 39227386
Alignment:
Q  181 acttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    |||||||||| | |||||||||| |  |||||||||||| ||| ||| | ||||||| ||||| | ||| |||||||| | |||||||||    
T  39227475 acttgaacacactttagagtatcaatctgttctttcatatattgttatcttcaaaaccttagaaacattattctaaaatcgactttggtt 39227386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 35150261 - 35150106
Alignment:
Q  112 ttcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgtt 211  Q
    |||| |||||| ||||| ||||||||||| |||| ||   ||||||||| || ||||||| |  ||||| ||||||||| |  || ||||  ||||||||    
T  35150261 ttcagagcttgatgtttcagaaccaacaacttgactttgaagtcagaatttagttttatggtattgcacccttgaacacacactaaagtactcaattgtt 35150162  T
Q  212 ctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 267  Q
     ||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||    
T  35150161 atttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttg 35150106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 24715758 - 24715650
Alignment:
Q  162 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 261  Q
    ||||| |||| || |||||| |||||||| | |||||||| ||||||||||||||||| ||| ||| ||||||||  ||| ||| |||| | ||||||||    
T  24715758 taattgtatggtcttgcacaattgaacacacattagagtacccaattgttctttcataaattgttatcatcaaaatcttaaagacattgatgtaaaaccc 24715659  T
Q  262 actttggtt 270  Q
    |||||||||    
T  24715658 actttggtt 24715650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 12285854 - 12285764
Alignment:
Q  180 cacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    |||||||| || | |||||||| |||||||||||||| |||||| ||| |||||||| |||| ||| |||||| ||||| |||||||||||    
T  12285854 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaatccactttggtt 12285764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 9736410 - 9736527
Alignment:
Q  141 gttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttt 240  Q
    |||||||||||||| ||||  ||||| |||| |||||  | ||||||||  | ||||  || | ||||||||||||||||||| ||| |||||||||| |    
T  9736410 gttgaattcagagttagaacttaattctatggtcctgaccccttgaacaaactttaggctacctaattgttctttcatacatttttatcatcaaaactgt 9736509  T
Q  241 agagatattgttctaaaa 258  Q
    ||||| ||||||||||||    
T  9736510 agagacattgttctaaaa 9736527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 9883107 - 9883032
Alignment:
Q  162 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaac 237  Q
    |||||||||| |  ||||||||| |||||   ||||||||| |||||||||||||||||||| |||||||||||||    
T  9883107 taattttatggtagtgcacacttaaacacaaattagagtattcaattgttctttcatacatttttaccatcaaaac 9883032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 19601627 - 19601508
Alignment:
Q  117 agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttc 216  Q
    |||||| ||| |||||||||| || |||| || | | ||||||| ||||| |||||||||||| ||||||| ||  |||| | ||  ||||| ||| |||    
T  19601627 agcttgatgtattagaaccaaaaacttgattttaaattcagaatttaattatatgatcctgcatacttgaatacatgttacaatactcaattattcattc 19601528  T
Q  217 atacattattaccatcaaaa 236  Q
    ||||||||||| ||||||||    
T  19601527 atacattattatcatcaaaa 19601508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 20748672 - 20748743
Alignment:
Q  199 gtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    ||||||||||||||||||||||||| ||| ||||  | | ||| ||| |||||||||| |||||||||||||    
T  20748672 gtatccaattgttctttcatacattgttatcatcgtatccttatagacattgttctaatacccactttggtt 20748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 7221262 - 7221347
Alignment:
Q  176 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 262  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||| ||| ||| ||||||||| ||||| ||||| || |||||||||    
T  7221262 tgcacacttgaacaaactttagagtatccaattgttattttata-atttttatcatcaaaaccttagaaatattattttaaaaccca 7221347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 23692967 - 23693038
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacatt 223  Q
    ||||||||| ||||| |||| || ||| | ||||||||| | |||||||| ||||||||| |||||||||||    
T  23692967 agtcagaatttaattatatggtcttgctcgcttgaacacacattagagtacccaattgttatttcatacatt 23693038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 16300733 - 16300692
Alignment:
Q  221 attattaccatcaaaactttagagatattgttctaaaaccca 262  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||    
T  16300733 attattatcatcaaaactttaaagacattgttctaaaaccca 16300692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 7224279 - 7224311
Alignment:
Q  230 atcaaaactttagagatattgttctaaaaccca 262  Q
    |||||||| ||||||||||||||||||||||||    
T  7224279 atcaaaaccttagagatattgttctaaaaccca 7224311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 24559019 - 24558953
Alignment:
Q  207 ttgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 273  Q
    ||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||    
T  24559019 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaa 24558953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 24600051 - 24599985
Alignment:
Q  207 ttgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 273  Q
    ||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||    
T  24600051 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaa 24599985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 11848353 - 11848263
Alignment:
Q  180 cacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    ||||||||||| | ||| | || | ||||||||||||||||| | ||| ||||||||| ||||||| |||||| |||||||||||||||||    
T  11848353 cacttgaacacacattataataccaaattgttctttcatacaatgttatcatcaaaaccttagagacattgttgtaaaacccactttggtt 11848263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 18807449 - 18807535
Alignment:
Q  150 agagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaa 236  Q
    ||||| ||||| ||||||||||||||| ||||||||||||| | ||||  |||||||||||| ||| |||  || ||| ||||||||    
T  18807449 agagttagaatttaattttatgatccttcacacttgaacacaccttagcatatccaattgttttttgatattttgttatcatcaaaa 18807535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 17771794 - 17771693
Alignment:
Q  119 cttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcat 218  Q
    |||||||||| | |||||| ||||||| |||| ||||| ||| ||||| ||| | | |  ||||||||| || | |||||||||| ||||||||||||||    
T  17771794 cttggtgtttcaaaaccaataagttgacttcaaagtcataatttaattatataaacttagacacttgaatacacattagagtatctaattgttctttcat 17771695  T
Q  219 ac 220  Q
    ||    
T  17771694 ac 17771693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 16687198 - 16687129
Alignment:
Q  152 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcataca 221  Q
    ||||| ||| ||||| |||| || ||||||||| ||||| | |||||||| |||||| ||||||||||||    
T  16687198 agtcataatttaattctatggtcttgcacacttaaacacacattagagtacccaattattctttcataca 16687129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 15990808 - 15990752
Alignment:
Q  41 tttgaattttgttgaactttcttcatatcatagttttagtcatcatagcttcttctt 97  Q
    ||||| ||||||||  ||||| ||| ||||||||| ||||||||||||||| |||||    
T  15990808 tttgacttttgttggcctttcatcagatcatagttctagtcatcatagctttttctt 15990752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 16686480 - 16686436
Alignment:
Q  214 ttcatacattattaccatcaaaactttagagatattgttctaaaa 258  Q
    |||||| ||||||| ||||||||||||| |||||||||| |||||    
T  16686480 ttcatatattattatcatcaaaactttaaagatattgttttaaaa 16686436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 14761285 - 14761378
Alignment:
Q  176 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 270  Q
    ||||||||||||||| ||||| |||| | ||||| | ||||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||    
T  14761285 tgcacacttgaacacacgttatagtaccaaattgct-tttcatacattgttatcatcaaaattttagagacattgttctaaaacccactatggtt 14761378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 12870028 - 12869801
Alignment:
Q  20 gatgcatcttctaattagagctttga-attttgttgaactttcttcatatcatagttttagtcatcatagcttcttcttgattaccaaatgcattc---- 114  Q
    ||||||||||||||||||| |||||| ||||| |||| ||||||||| ||||||||   |||| | | || ||| |||||| |||||||||| |||        
T  12870028 gatgcatcttctaattagaactttgacattttattgacctttcttcagatcatagtcaaagtccttagagattc-tcttgagtaccaaatgcgttctttt 12869930  T
Q  115 ------aaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaatt 208  Q
          | || ||||||| | ||||||||||||||||  ||||| ||||||| ||||| |||| |||||||||  ||||||| | || ||||| | | ||    
T  12869929 gcgtttagagtttggtgtctcagaaccaacaagttgacatcagattcagaatttaattatatggtcctgcacatctgaacactcatttgagtacctagtt 12869830  T
Q  209 gttctttcatacattattaccatcaaaac 237  Q
     |||||||||||||| |||  ||||||||    
T  12869829 attctttcatacattgttataatcaaaac 12869801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 33546579 - 33546652
Alignment:
Q  117 agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacac 190  Q
    |||||||| ||| |||||||||||||||| |||||| ||| ||| |||||  ||| ||||||| ||||||||||    
T  33546579 agcttggtatttcagaaccaacaagttgacttcagaatcaaaatttaattcaatggtcctgcagacttgaacac 33546652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 4425 - 4317
Alignment:
Q  162 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 261  Q
    ||||| |||| ||||||||||| |||||  | |||||||||||||||||| ||| |||| || ||| ||||| ||   || ||| |||||||||||||||    
T  4425 taattatatggtcctgcacactcgaacatacattagagtatccaattgttattttatactttgttaacatcagaatcatatagacattgttctaaaaccc 4326  T
Q  262 actttggtt 270  Q
    |||||||||    
T  4325 actttggtt 4317  T

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