View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15499_low_1 (Length: 520)
Name: NF15499_low_1
Description: NF15499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15499_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 10663422 - 10663730
Alignment:
| Q |
17 |
attatgttatcttaaatgtagattatttaatattatcctgtttgtatatatgtttttctgagnnnnnnncctttgtgtgtataatgaagtaatggagtct |
116 |
Q |
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| T |
10663422 |
attatgttatcttaaatgtagattatttaatattatgctgtttgtatatatgtttttctgagtttttttcctttgtgtgtataatgaagtaatggagtct |
10663521 |
T |
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| Q |
117 |
aagtcaatatccatcttcatttggccaaatccgcattatgtttattgttaaactaaaaatagtttattcaccatacttctgacatgcatgagtatccaaa |
216 |
Q |
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| T |
10663522 |
aagtcaatatccatcttcatttggccaaaaccgcattatgtttattgttaaactaaaaatagtttattcaccatacttctgacatgcatgagtatccaaa |
10663621 |
T |
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| Q |
217 |
ttactcagaatattaattaagtcattatcataagtggttagatgttcattattaagtccaatattttcatttgaacaattcataattaagatataagtcc |
316 |
Q |
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| T |
10663622 |
ttactcagaatattaattaagtcattatcataagtggttagatgttcattattaagtccaataatttcatttgaacaattcataattaagatataagtcc |
10663721 |
T |
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| Q |
317 |
actctttct |
325 |
Q |
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| T |
10663722 |
actctttct |
10663730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 507
Target Start/End: Original strand, 10663925 - 10663994
Alignment:
| Q |
438 |
ctattagcatgcctaaatgccttaacttgtgtgtatgtccacnnnnnnnaaaattaggttctcacaggtt |
507 |
Q |
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| T |
10663925 |
ctattagcatgcctaaatgccttaacttgtgtgtatgtccactttttctaaaattaggctctcacaggtt |
10663994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 372
Target Start/End: Original strand, 10663718 - 10663757
Alignment:
| Q |
333 |
gtccactctttctaatcatcttcttgtatatgccaaaagg |
372 |
Q |
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| T |
10663718 |
gtccactctttctaatcatcttcttgtaaatgccaaaagg |
10663757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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