View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15499_low_10 (Length: 227)
Name: NF15499_low_10
Description: NF15499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15499_low_10 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13716036 - 13715810
Alignment:
| Q |
1 |
acatagggaatgtggagaatgttctcttttggaaggacatgtggcccggtgagccattggtgcagtctctaagcattcctactcatttgcatgcttagct |
100 |
Q |
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| T |
13716036 |
acatagggaatgtggagaatgttctcttttggaagcacatgtggcccggtgagccattggtgaagtctctaagcattcctactcatttgcatgcttagct |
13715937 |
T |
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| Q |
101 |
gaacatgaaggtgtcatattacattgtgcaccaacaatggcagattccctcatacattagccgtaaatatcctactttgacggtgctgatacaaaatacg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13715936 |
gaacatgaaggtgtcatattacatcgtgcaccaacaatggcagattccctcatacattagccctaaatatcctactttgacggtgctgatacaaaatacc |
13715837 |
T |
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| Q |
201 |
actctttgcattgaacctcaaaatgac |
227 |
Q |
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| T |
13715836 |
actctttgcattgaacctcaaaatgac |
13715810 |
T |
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Target: scaffold0118 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 36299 - 36099
Alignment:
| Q |
6 |
gggaatgtggagaatgttctcttttggaaggacatgtggcccggtgagccattggtgcagtctctaagcattcctactcatttgcatgcttagctgaaca |
105 |
Q |
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||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||| | ||||| |||||| ||||| ||| |
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| T |
36299 |
gggaatggggagaatgttctcttttggaaggacaggtggttgggtgagccgttggtgcagtctctcagcattccttcacattttcatgctcagctggaca |
36200 |
T |
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| Q |
106 |
tgaaggtgtcatattacattgtgcaccaacaatggcagattccctcatacattagccgtaaatatcctactttgacggtgctgatacaaaatacgactct |
205 |
Q |
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||||||||||| |||||||| ||||||| ||||||| ||||||| | |||||||| |||||||||||| |||||||| | |||||||||||| ||||| |
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| T |
36199 |
tgaaggtgtcagattacattctgcaccatcaatggcggattcccacctacattagttctaaatatcctaccttgacggttcagatacaaaataccactct |
36100 |
T |
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| Q |
206 |
t |
206 |
Q |
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| T |
36099 |
t |
36099 |
T |
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