View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15499_low_5 (Length: 323)
Name: NF15499_low_5
Description: NF15499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15499_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 47540501 - 47540196
Alignment:
| Q |
1 |
ccacatgtactgtcaattatnnnnnnntctggacattattgttgtgaacttgcaatgtacatacttctattgattatgagtttcaactgtagatgctctg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47540501 |
ccacatgtactgtcaattataaaaaaatctggacattattgttgtgaacttgcaatgtacatacttctattgattatgagtttcaactgtagatgctctg |
47540402 |
T |
|
| Q |
101 |
ttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccacagctagtgcatcacatgtgtaacaccacaaatgaaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47540401 |
ttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccacagctagtgcatcacatgtgtaacaccacaaatgaaaaca |
47540302 |
T |
|
| Q |
201 |
aatgtataagatggagaagtagttttggacgttcttcttcctgactacttgaccctaaaaaagttcttgttattgccacaatgcaagattctcaactcgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
47540301 |
aatgtataagatggagaagtagttttggacgttcttcttcctgactacttgaccctaaaaaagttcttgtcattgccacaatgtaagattctcaactcgt |
47540202 |
T |
|
| Q |
301 |
atatat |
306 |
Q |
| |
|
|||||| |
|
|
| T |
47540201 |
atatat |
47540196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 47546750 - 47546673
Alignment:
| Q |
85 |
aactgtagatgctctgttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccaca |
162 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||||| | || ||||||||||||||||||||||| ||||| |
|
|
| T |
47546750 |
aactgtagcggctctgttaggatcatgcaagtcaacggtggtaccagtggggtccacacagaattcaacaaatccaca |
47546673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 47539147 - 47539063
Alignment:
| Q |
211 |
atggagaagtagttttggacgttcttcttcctgactacttgaccctaaaaaagttcttgttattgccacaatgcaagattctcaa |
295 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||| ||| ||||||||||| | ||||||||| |
|
|
| T |
47539147 |
atggagaagtagttttagaccttctttctcctagctacttgaccctaaaaaagttctcgtttttgccacaatgtatgattctcaa |
47539063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 47546614 - 47546540
Alignment:
| Q |
194 |
gaaaacaaatgtataagatggagaagtagttttggacgttcttcttcctgactacttgaccctaaaaaagttctt |
268 |
Q |
| |
|
|||||||||| ||||| | | ||||||||||||||||| |||||||| || || ||||||||||||||||||||| |
|
|
| T |
47546614 |
gaaaacaaatctataacaagaagaagtagttttggacgatcttcttcatggcttcttgaccctaaaaaagttctt |
47546540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University