View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15499_low_7 (Length: 259)

Name: NF15499_low_7
Description: NF15499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15499_low_7
NF15499_low_7
[»] chr1 (7 HSPs)
chr1 (13-254)||(32656908-32657150)
chr1 (16-148)||(32630966-32631098)
chr1 (13-148)||(32581734-32581870)
chr1 (165-254)||(32631172-32631258)
chr1 (165-254)||(32600059-32600145)
chr1 (187-254)||(32581948-32582012)
chr1 (73-138)||(32599901-32599965)
[»] chr8 (2 HSPs)
chr8 (13-90)||(41163530-41163608)
chr8 (211-254)||(41146975-41147018)
[»] chr6 (1 HSPs)
chr6 (203-254)||(26398192-26398243)
[»] chr5 (1 HSPs)
chr5 (203-254)||(21016171-21016222)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 32656908 - 32657150
Alignment:
Q  13 cctgccacaaataaactatttaaatttaacttacaaatgtctaa-taaaaccataaacttcaaagtgctccgactaaacggctagggttacagcacaaat 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  32656908 cctgccacaaataaactatttaattttaacttacaaatgtctaaataaaaccatacacttcaaagcgctccgactaaacggctagggttacagcacaaat 32657007  T
Q  112 gtagtcgaaaagtgaaaacaaagttttacagcataaacagaatcacgaaagacaattaattgcagcttctccaatttcttcctcaaatggcggcttatca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32657008 gtagtcgaaaagtgaaaacaaagttttacagcataaacagaatcacgtaagacaattaattgcagcttctccaatttcttcctcaaatggcggcttatca 32657107  T
Q  212 gactgttttgtctacttaaaatcaaagcattacttgttctctg 254  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32657108 gactgttttgtctacttaaaatcaaagcattacttgttctctg 32657150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 32630966 - 32631098
Alignment:
Q  16 gccacaaataaactatttaaatttaacttacaaatgtctaa-taaaaccataaacttcaaagtgctccgactaaacggctagggttacagcacaaatgta 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| |||| |||| ||||||||||||||  ||||||||| ||||      
T  32630966 gccacaaataaactttttaaatttaacttacaaatgtctaactaaaaccgtaaacttgaaagcgctctgactaaacggctagttttacagcac-aatgct 32631064  T
Q  115 gtcgaaaagtgaaaacaaagttttacagcataaa 148  Q
     || ||||||||||||||||||||||||||||||    
T  32631065 atccaaaagtgaaaacaaagttttacagcataaa 32631098  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 32581734 - 32581870
Alignment:
Q  13 cctgccacaaataaactatttaaatttaacttacaaatgtctaa-taaaaccataaacttcaaagtgctccgactaaacggctagggttacagcacaaat 111  Q
    |||| ||||||||||||  ||||||||||| ||||||| ||||| ||||||||||||||| |||| |||| ||||||||||||||  |||||||||||||    
T  32581734 cctggcacaaataaacttcttaaatttaacatacaaatatctaactaaaaccataaacttgaaagcgctctgactaaacggctagttttacagcacaaat 32581833  T
Q  112 gtagtcgaaaagtgaaaacaaagttttacagcataaa 148  Q
    |  ||| ||||||||||  ||||||||||||||||||    
T  32581834 gcggtccaaaagtgaaattaaagttttacagcataaa 32581870  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 32631172 - 32631258
Alignment:
Q  165 aattaattgcagcttctccaatttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagcattacttgttctctg 254  Q
    ||||||||||||||||| ||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32631172 aattaattgcagcttctacaatttcttcctcaaatggc---ttatcacactgttttgtctacttaaaatcaaagcattacttgttctctg 32631258  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 32600059 - 32600145
Alignment:
Q  165 aattaattgcagcttctccaatttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagcattacttgttctctg 254  Q
    ||||||| ||||||||| ||| ||||| ||||||||||   |||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  32600059 aattaatagcagcttctacaagttctttctcaaatggc---ttatcacactgtcttgtctacttaaaatcaaagtattacttgttctctg 32600145  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 32581948 - 32582012
Alignment:
Q  187 ttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagcattacttgttctctg 254  Q
    ||||||||||||||||   |||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  32581948 ttcttcctcaaatggc---ttatcacactgttttgtcaacttaaaatcaaagcattacttattctctg 32582012  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 32599901 - 32599965
Alignment:
Q  73 aaagtgctccgactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaagtttt 138  Q
    |||| |||||||||||||||||| | ||||||||||||||  |||   ||||||||||||||||||    
T  32599901 aaagcgctccgactaaacggcta-gtttacagcacaaatgctgtcctgaagtgaaaacaaagtttt 32599965  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 41163530 - 41163608
Alignment:
Q  13 cctgccacaaataaactatttaaatttaacttacaaatgtct-aataaaaccataaacttcaaagtgctccgactaaac 90  Q
    ||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||    
T  41163530 cctgccacaaataaaatttgtaaatttaacttacaaatgtctaaataaaaccataaacttgaaagcgcttcgactaaac 41163608  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 41146975 - 41147018
Alignment:
Q  211 agactgttttgtctacttaaaatcaaagcattacttgttctctg 254  Q
    |||| |||||||||||| |||||||||||||| |||||||||||    
T  41146975 agacagttttgtctactcaaaatcaaagcattgcttgttctctg 41147018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 26398192 - 26398243
Alignment:
Q  203 ggcttatcagactgttttgtctacttaaaatcaaagcattacttgttctctg 254  Q
    |||||| || ||||||||||||||| |||||||||||||| | |||||||||    
T  26398192 ggcttaccacactgttttgtctactcaaaatcaaagcattgcgtgttctctg 26398243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 21016222 - 21016171
Alignment:
Q  203 ggcttatcagactgttttgtctacttaaaatcaaagcattacttgttctctg 254  Q
    |||||| || ||||||||||||||| |||||||||||||| | |||||||||    
T  21016222 ggcttaccacactgttttgtctactcaaaatcaaagcattgcgtgttctctg 21016171  T

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