View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15499_low_9 (Length: 236)
Name: NF15499_low_9
Description: NF15499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15499_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31613124 - 31612905
Alignment:
| Q |
1 |
taatgtccctattgttaatggtttcctcccaaacttatccaacaagattgctgttatcatgaacgctggcatctctgctaccgcgttgagtattacgtta |
100 |
Q |
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| T |
31613124 |
taatgtccctattgttaatggcttcctcccaaacttatccaacaagattgctgttatcatgaacgctggcatctccgccactgcgttgagtattacgtta |
31613025 |
T |
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| Q |
101 |
aggtaaagatttgtttcgaggtttactacgtttaggcttagaccatagtacaccactgagcacaataagttgataattgttgctaaaaccaaacgtgtac |
200 |
Q |
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| T |
31613024 |
aggtaaagatttgtttcgaggtttactacgtttaggcttagaccatagtacaccactgagcacaataagttgatgattgttgctaaaaccaaacgtgtac |
31612925 |
T |
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| Q |
201 |
gtgttactggtgaatgaatc |
220 |
Q |
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|||||||||||||| ||||| |
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| T |
31612924 |
gtgttactggtgaacgaatc |
31612905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 34418499 - 34418651
Alignment:
| Q |
4 |
tgtccctattgttaatggtttcctcccaaacttatccaacaagattgctgttatcatgaacgctggcatctctgctaccgcgttgagtattacgttaagg |
103 |
Q |
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| T |
34418499 |
tgtccctattgtcaatggtttccttccaaacctatccaataacactgcggttatcgtgaatgctggcatctctgcgactgcatttagaagcacgttcatg |
34418598 |
T |
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| Q |
104 |
taaagatttgtttcgaggtttactacgtttaggcttagaccatagtacaccac |
156 |
Q |
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| T |
34418599 |
tagaggttggtttcgaggtttgtaacgtttaagctaagaccataatacaccac |
34418651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 34430748 - 34430834
Alignment:
| Q |
4 |
tgtccctattgttaatggtttcctcccaaacttatccaacaagattgctgttatcatgaacgctggcatctctgctaccgcgttgag |
90 |
Q |
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|||||||||||| ||||| |||||||||||| |||||||||| | || |||||| ||||| ||||| ||||||||||| ||||| |
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| T |
34430748 |
tgtccctattgtcaatggcttcctcccaaacctatccaacaacaccgccgttatcgcaaacgccggcatttctgctaccgcattgag |
34430834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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