View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1549_high_13 (Length: 222)
Name: NF1549_high_13
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 25476534 - 25476347
Alignment:
| Q |
17 |
taggtattaaaattgaaatggagcaggaaaatcaaaccccatttgagcagcaatattcaaaaatcacaaaaattttgaaagtcgattttgttagagtaaa |
116 |
Q |
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| T |
25476534 |
taggtattgaaattgaaatggagcagaaaaatcaaaccccgtttgagcagcagtattcaaaaatcacaaaaattttgagagtcaattttgttagagtaaa |
25476435 |
T |
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| Q |
117 |
atatttacatatacctatcaaaatcctcattgttgaccaagtattgcacatgcaccgactgagatgaagaatcgacaactttcccttt |
204 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
25476434 |
atatttacatatacctatcaaaatcctcggtgttgagcaagtattgcacatgcaccgattgagatgaagaatcgacgactttcccttt |
25476347 |
T |
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