View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1549_high_15 (Length: 208)
Name: NF1549_high_15
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_high_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 24766698 - 24766512
Alignment:
| Q |
19 |
gtcttaatataaaagaatgcaggaagccggtccattatattattttctaaaagaatgcacttaaagtggagtaaatacacacac--gcactgcattgtat |
116 |
Q |
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| T |
24766698 |
gtcttaatacaaaagaatgcatgaagccgttccattat-----ttcctaaaagaatgcacttaaagtggagtaaatacacacacacgcactgcattgtat |
24766604 |
T |
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| Q |
117 |
tcnnnnnnngactgaaataacaacaataaatcgcagtcatggctaattacaaatgcnnnnnnntatagagcaatttaattaaacacagcaat |
208 |
Q |
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| T |
24766603 |
tctttttttgactgaaataacaacaataaatcgcagtgatggctaattacaaatgcaaaaaaatatagagcaatttaattaaacgcagcaat |
24766512 |
T |
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