View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1549_high_5 (Length: 324)
Name: NF1549_high_5
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 40827663 - 40827846
Alignment:
| Q |
8 |
aagcataggggtggaacaatgcacatgatgatgaatgtccattgctagctctagtgtccaattatctacttctggaaactcaaaccctagtttcttaaaa |
107 |
Q |
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| T |
40827663 |
aagcaaaggggtggaacaatgcacatgatgatgaatgtccattgctagctctagtgtccaattatctacttctggaaactcaaaccctagtttcttaaaa |
40827762 |
T |
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| Q |
108 |
taaaaatcttgaaaagaatatatatttactcaaaatgctgcctatactagagttccaagttaaaatgaaaaatgctacctacaa |
191 |
Q |
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| T |
40827763 |
taaaaatcatgaaaagaatatatatttactcaaaatgctgcctatactagagatccaagttaaaatgaaaaatgctacctacaa |
40827846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 40827917 - 40827962
Alignment:
| Q |
262 |
gacatcacatattaatgccttacacgtgatgatgatggttgttaat |
307 |
Q |
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| T |
40827917 |
gacatcacatattaatgccttacacgtgatgatgatggttgttaat |
40827962 |
T |
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