View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1549_high_9 (Length: 239)

Name: NF1549_high_9
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1549_high_9
NF1549_high_9
[»] chr2 (3 HSPs)
chr2 (1-237)||(12248175-12248411)
chr2 (1-227)||(11994528-11994754)
chr2 (25-158)||(32682113-32682246)
[»] chr5 (9 HSPs)
chr5 (1-164)||(42128610-42128773)
chr5 (1-164)||(42117468-42117631)
chr5 (1-170)||(42123216-42123385)
chr5 (4-101)||(41444084-41444181)
chr5 (1-162)||(34232986-34233147)
chr5 (1-164)||(34240757-34240920)
chr5 (7-113)||(41713800-41713906)
chr5 (1-74)||(41572300-41572373)
chr5 (1-74)||(41617939-41618012)
[»] chr3 (1 HSPs)
chr3 (1-164)||(8522839-8523002)
[»] chr4 (1 HSPs)
chr4 (5-138)||(11117883-11118016)
[»] chr6 (2 HSPs)
chr6 (1-157)||(24140566-24140722)
chr6 (4-158)||(25523231-25523385)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12248175 - 12248411
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12248175 ttatgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 12248274  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatcatagtagagtgcaattgatcggatggagactgggttggccct 200  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12248275 tgtttggaattttaacccatgtcattttgttcccttttgatgccacaatcacagaatcatagtagggtgcaattgatcggatggagactgggttggccct 12248374  T
Q  201 attgttaagacctagctgccctatattcttcgacatg 237  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  12248375 attgttaagacctagctgccctatattattcgtcatg 12248411  T

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Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11994754 - 11994528
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11994754 ttatgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 11994655  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatcatagtagagtgcaattgatcggatggagactgggttggccct 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11994654 tgtttggaattttaacccatgtcattttgttcccttttgacgccacaatcacagaatcatagtagggtgcaattgatcggatggagactgggttggccct 11994555  T
Q  201 attgttaagacctagctgccctatatt 227  Q
    ||||  |||||||||| ||||||||||    
T  11994554 attgaaaagacctagcagccctatatt 11994528  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 32682246 - 32682113
Alignment:
Q  25 agtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgtttggaattttaaccaatgtca 124  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||| |  |||||||||| || | |||||    
T  32682246 agtgcatgaagctccccaatagcatttggaatctctccttcaaatctgtttcttgacaaatcaatacttacaaagtttcttggaattttcactagtgtca 32682147  T
Q  125 ttttgttcccttttgacgccacaatcacagaatc 158  Q
    ||||| ||||||||| | ||| | ||||||||||    
T  32682146 ttttgctcccttttgtccccatagtcacagaatc 32682113  T

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Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 42128610 - 42128773
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    |||||||||||||| || ||||| ||||| ||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  42128610 ttatgggaaaggttgagtcctattagtgcatgaagctcaccaaaatcatttggaatatctccttcaaatttgtttcttgacaaatcaataattacaaaga 42128709  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatcatagta 164  Q
    | ||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  42128710 tatttggaattttcaccaatgtccttttgttcccttttgtcgccacaatcatagaatcatagta 42128773  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 42117468 - 42117631
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    ||||||||||||||||||||| | ||||| || || || |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| || |    
T  42117468 ttatgggaaaggttaagccctttgagtgcatggaggtctccaatagcatttggaatctctccctcaaatttgttttttgacaaatcaataattacaaaaa 42117567  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatcatagta 164  Q
    ||||||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  42117568 tgtttggaattttcaccaatgtcattttgctcccttttgtcgacacaatcacagaatcatagta 42117631  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 42123216 - 42123385
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    ||||||||||||||||||||||| ||||| || ||||  |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||      
T  42123216 ttatgggaaaggttaagccctatgagtgcatgtagctttccaatagcatttggaatctctccttcaaatttgtttcttgacatatcaatacttacaaact 42123315  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatcatagtagagtgc 170  Q
    | |||||||||||||| | |||||||||| | |||||||  |||||  ||||||||||| ||||| ||||    
T  42123316 tttttggaattttaacgagtgtcattttggttccttttgttgccacggtcacagaatcagagtagtgtgc 42123385  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 41444084 - 41444181
Alignment:
Q  4 tgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagat 101  Q
    ||||||||||| || ||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||| |||||    
T  41444084 tgggaaaggttgagtcctatgattgcatgaagctcaccaataacatttggaatgtctccttcaaatttgtttcctgaaaaatcaatacttacaaagat 41444181  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 34233147 - 34232986
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    ||||| ||||||||||||||| | ||||| ||||| || || ||| ||||||||||  |||| | ||| ||||||||||| ||||||||| |||| |||     
T  34233147 ttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatacttacaaagt 34233048  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatcatag 162  Q
    |  |||||||||| ||||||||||| ||| |||||||    |||||| ||||||||||||||    
T  34233047 ttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag 34232986  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 34240920 - 34240757
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    ||||| ||||||||||||||| | ||||| ||||| || || ||| ||||||||||  |||| | ||| ||||||||||| ||||||||| |||| || |    
T  34240920 ttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatacttacaaaca 34240821  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatcatagta 164  Q
    |  ||||||||||   || |||||||||| | ||||||| || |||| ||||||||||||||||    
T  34240820 ttgttggaattttcgtcagtgtcattttgatgccttttgtcgtcacagtcacagaatcatagta 34240757  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 41713906 - 41713800
Alignment:
Q  7 gaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgtttg 106  Q
    ||||||||||||||| | ||  | |||||||| |||||||||| ||||||||| || |||||||| |||||||| ||||||||| || | ||||| ||||    
T  41713906 gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatctccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg 41713807  T
Q  107 gaatttt 113  Q
    |||||||    
T  41713806 gaatttt 41713800  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41572373 - 41572300
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtt 74  Q
    ||||||||||||||||||||| | ||||  |||||||| |||||||||||  |||||||||||||||| |||||    
T  41572373 ttatgggaaaggttaagccctttgagtgagtgaagctccccaataacattcagaatctctccttcaaaattgtt 41572300  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41618012 - 41617939
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtt 74  Q
    ||||||||||||||||||||| | ||||  |||||||| |||||||||||  |||||||||||||||| |||||    
T  41618012 ttatgggaaaggttaagccctttgagtgagtgaagctccccaataacattcagaatctctccttcaaaattgtt 41617939  T

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Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 8522839 - 8523002
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| |||     
T  8522839 ttatgggaaaggttaagccctatgattgcatgaagctcaccaataatctttggaatctcgccttcaaatttgtttcttgacaaatcaataattacaaagt 8522938  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatcatagta 164  Q
    ||||||||||||| || | | |||||||||||||||||| ||||||||||||||||||||||||    
T  8522939 tgtttggaattttcactagtttcattttgttcccttttgtcgccacaatcacagaatcatagta 8523002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 11117883 - 11118016
Alignment:
Q  5 gggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgtt 104  Q
    ||||||| ||||||||| | ||||| |||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||  |  |    
T  11117883 gggaaagattaagccctttgagtgcatgaagctctccaatagcatttgtaatctctccttcaaatttgtttcttgacaaatcaatacttactaactttat 11117982  T
Q  105 tggaattttaaccaatgtcattttgttccctttt 138  Q
    ||||||||| |||| |||||||||||||||||||    
T  11117983 tggaattttcaccagtgtcattttgttccctttt 11118016  T

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Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 24140566 - 24140722
Alignment:
Q  1 ttatgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaaga 100  Q
    |||||||||||||||| |||| | ||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||| ||| ||| |||| ||      
T  24140566 ttatgggaaaggttaatccctttgagtgcatgaagctctccgatagcatttggaatctctccttcaaatttgtttcttgacatatcgatacttacaaact 24140665  T
Q  101 tgtttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaat 157  Q
    | ||||||||||| |||| |||||||||| |||||||||  |||||| |||||||||    
T  24140666 tttttggaattttcaccagtgtcattttggtcccttttgttgccacagtcacagaat 24140722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 25523385 - 25523231
Alignment:
Q  4 tgggaaaggttaagccctataagtgcttgaagctcaccaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgt 103  Q
    |||||||||||||||||| | ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||  ||| ||  |      
T  25523385 tgggaaaggttaagccctttgagtgcatgaagctctccaatagcatttggaatctctccttcaaatttgtttcttgaaaaatcaatagatacaaacttta 25523286  T
Q  104 ttggaattttaaccaatgtcattttgttcccttttgacgccacaatcacagaatc 158  Q
    |||||||||| |||||| ||||||   |||||||||  |||||| ||||||||||    
T  25523285 ttggaattttcaccaatttcatttgaatcccttttgttgccacagtcacagaatc 25523231  T

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