View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1549_low_1 (Length: 3728)
Name: NF1549_low_1
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 1345; Significance: 0; HSPs: 22)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1345; E-Value: 0
Query Start/End: Original strand, 18 - 1780
Target Start/End: Original strand, 27482482 - 27484227
Alignment:
| Q |
18 |
catatgagcagttccgtagataagataaccaccttttttcatagggaaacttgctttctgaacatggacagggtcactactattgtttccaggaataaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
27482482 |
catatgagcagttccgtagataagataaccacctttttctatagggaaacttgctttctgaacatggacatggtcactgctattgtttcctggaataaaa |
27482581 |
T |
|
| Q |
118 |
tactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaatgtgccaaatgatttaaacctactatcatgagtgttagttagaagtgaat |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
27482582 |
tactctgtctgtggcaaattaagaaatatttgttaatcactttctatgaaggttcaaaatgatttaaaactactatcataagtgttag----aagtgaac |
27482677 |
T |
|
| Q |
218 |
ttatttttctttttgcatgcaaatgtgaatactatttgttactatatttcatgctagaaggtagagtttccttaaaagactttttaatatttccaaattc |
317 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27482678 |
tttttttt-tttttgcatgcaaatgtgaatactatctgttactatatttcatgttagaaggtagagtttccttaaaagaccttttaatatttccaaattc |
27482776 |
T |
|
| Q |
318 |
agttgttcataaaattgaaaattgaatttaaataatttttaccagacaatcatgtattgttttagaaccatctgttttgacacgatcagtggaatccatc |
417 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27482777 |
aattgttcataaaattgaaaattgaatttaaataacttttaccagacaatcatgtattgttttagaaccatttgttttgacacgatcagtggaatccatc |
27482876 |
T |
|
| Q |
418 |
acataaaatttaacggggatttgatgttcgttccagtcaacccacgttattttgtatcttatagcaagctttctacgtggtgctaggagtccctttttca |
517 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
27482877 |
acataaaatctaacagggatttgttgttcgttccagtcaacccacattattttgtatcttatagcaagctttctacgtggtgctgggagtccctttctca |
27482976 |
T |
|
| Q |
518 |
acttgcactgaaatttgttgtggcaacaaaagattcctcctttatagtcatgggacaatggtttatcatggatatcatgtgtctcattataaaaattctt |
617 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27482977 |
acttgcactgaaatttattgtggcaacaaaagattcctcctttatagtcatgggacaatggtttatcatggatatcatgtgtcttattataaaaattctt |
27483076 |
T |
|
| Q |
618 |
tgggagattaaattggtcacacctacattcactacaacttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagccacttctctttc |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483077 |
tgggagattaaattggtcacacctacattcactgcaacttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagccacttctctttc |
27483176 |
T |
|
| Q |
718 |
cagtcttttgtaatatttgcagggttacctacttcaaccgcaaaaggatctggaagctttgaaattgttcctcgtgattcacctcccaacccccaataaa |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483177 |
cagtcttttgtaatatttgcagggttacctacttcaaccgcaaaaggatctggaagctttgaaattgttcctcgtgattcacctcccaacccccaataaa |
27483276 |
T |
|
| Q |
818 |
gtggaagaattaaatcgttgcaggttccttgatttctttttattatgggacccccaaacggttttgtattatcattggggtcgtgtgacatattcttatc |
917 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483277 |
gtggaagaattaaatcgttgcacgttccttgatttctttttattatgggacccccaaacggttttgtattatcattggggtcgtgtgacatattcttatc |
27483376 |
T |
|
| Q |
918 |
atcactttcatcatattttaaagcaaaccaatggtggatgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaagctc |
1017 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483377 |
atcaatttcatcatattttaaagcaaaccaatggtggatgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaagctc |
27483476 |
T |
|
| Q |
1018 |
ttgactccaatatgaccccttgaaaattcaatatccatcaatgatttactcacaacctcaccgggccccaattctaacttttctgacaaatatgttgctg |
1117 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27483477 |
ttgactccaatatgaccacttggaaattcaatatccatcaatgatttacttacaacctcaccgggccccaattctaacttttctgataaatatgttgctg |
27483576 |
T |
|
| Q |
1118 |
atttgatatgagttttatatgtcttctttttggagtaagttgtagttgattgcatcacaattattgataataaaaaattaaacgctttagagatcaatct |
1217 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27483577 |
atttgatatgagttttatacgtcttcttttttgagtaacttgtacttgattgcatcacaattattgataataaaaaaataaacgctttagagatcaatct |
27483676 |
T |
|
| Q |
1218 |
catgttcgcctgcatatgaatttattgttatactattagttatgaataatggttgtaatgtaattcttttgtgtaaagttatttatacatgaattttata |
1317 |
Q |
| |
|
|||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27483677 |
catgctcacctgcatatgaattta----tat----ttagttatgaataatggttgtaatgtaattcttttgtgtaaagttatttatacataaattttata |
27483768 |
T |
|
| Q |
1318 |
ataagtgcttgaaaagtagggaaattaatgtaaaggaaatacataccacatgagaaaccatagtaaatgtttgctccttgtcgaacttcaaggaagtttt |
1417 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
27483769 |
ataagtgcttgaaaagttggataattaatgtaaaggaaatacgtaccacatgagaaaccatagtaaaggtgtgctccttgtcaaacttcaaggaagtttt |
27483868 |
T |
|
| Q |
1418 |
gaaataaaaaattgatttagaatacaaatttgtgaagctgtggaggtcttgcctattttctacttttatagtaggaatttataaggttggcatagctttg |
1517 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483869 |
gaaataaaaaattga--tagaatacaaatttgtgaagatgtggagatcttgcctattttctacttttatagtaggaatttataaggttggcatagctttg |
27483966 |
T |
|
| Q |
1518 |
nnnnnnnnnnnnnntccaaatcatatatgcgnnnnnnnnaacaaatccaacgtatatgttgaatctctttcttcttgttgtcttatgtggtttctattta |
1617 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483967 |
----aaaaaaaaaatccaaatcatatatgcg-ttttttgaacaaatccaacgtatatgttgaatctctttcttcttgttgtcttatgtggtttctattta |
27484061 |
T |
|
| Q |
1618 |
tagttaattagttccaacaagataacaaaatttgtttagcacttattttatatctggcaatgcaagtcattaggtataata---tannnnnnnagctatt |
1714 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || || |||||| |
|
|
| T |
27484062 |
tagttaattagttccaataagataacaaaatttgtttagctcttattttatatttggcaatgcaagtcattaggtatattattttattttttttgctatt |
27484161 |
T |
|
| Q |
1715 |
tatgggtataataagttaatgtctattttagattacatttcaccaaaaatatttcgcaatacaagc |
1780 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || ||||||| |
|
|
| T |
27484162 |
tatgggtataataagttgatgtctattttagattacatctcaccaaaaatatttcacagtacaagc |
27484227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 858; E-Value: 0
Query Start/End: Original strand, 315 - 1299
Target Start/End: Original strand, 27490010 - 27491003
Alignment:
| Q |
315 |
ttcagttgttcataaaattgaaaattgaatttaaataatttttaccagacaatcatgtattgttttagaaccatctgttttgacacgatcagtggaatcc |
414 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
27490010 |
ttcaattgttcataaaattgaaaattgaatttaagtaacttttaccagacaatcatgtattgttttagaaccatttgttttggcacgatcagtggaatcc |
27490109 |
T |
|
| Q |
415 |
atcacataaaatttaacggggatttgatgttcgttccagtcaacccacgttattttgtatcttatagcaagctttctacgtggtgctaggagtccctttt |
514 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27490110 |
atcacataaaatctaacagggatttgatgttcgttccaatcaacccacgttattttgtatcttatagcaagctttctacgtggtgctgggagtccctttc |
27490209 |
T |
|
| Q |
515 |
tcaacttgcactgaaatttgttgtggcaacaaaagattcctcctttatagtcatgggacaatggtttatcatggatatcatgtgtctcattataaaaatt |
614 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27490210 |
tcaacttgcactgaaatttattgtggcaacaaaagattcctcctttatagtcatgggacaatggtttatcatggatatcatgtgtcttattataaaaatt |
27490309 |
T |
|
| Q |
615 |
ctttgggagattaaattggtcacacctacattcactacaacttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagccacttctct |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27490310 |
ctttgggagattaaattggtcacacctacattcactgcaacttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagccacttctct |
27490409 |
T |
|
| Q |
715 |
ttccagtcttttgtaatatttgcagggttacctacttcaaccgcaaaaggatctggaagctttgaaattgttcctcgtgattcacctcccaacccccaat |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27490410 |
ttccagtcttttgtaatatttgcagggttacctacttcaaccgcaaaaggatctggaagctttgaaattgttcctcgtgattcacctcccaacccccaat |
27490509 |
T |
|
| Q |
815 |
aaagtggaagaattaaatcgttgcaggttccttgatttctttttattatgggacccccaaacggttttgtattatcattggggtcgtgtgacatattctt |
914 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27490510 |
aaagtggaagaattaaatcgttgcacgttccttgatttctttttattatgggacccccaaacggttttgtattatcattggggtcgtgtgacatattctt |
27490609 |
T |
|
| Q |
915 |
atcatcactttcatcatattttaaagcaaaccaatggtggatgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaag |
1014 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27490610 |
atcatcactttcatcatattttaaagcaaaccaatggtggatgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaag |
27490709 |
T |
|
| Q |
1015 |
ctcttgactccaatatgaccccttgaaaattcaatatccatcaatgatttactcacaacctcaccgggccccaattctaacttttctgacaaatatgttg |
1114 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27490710 |
ctcttgactccaatatgacctcttggaaattcaatatccatcaatgatttactcacaacctcaccgggccccaattctaacttttctgataaatatgttg |
27490809 |
T |
|
| Q |
1115 |
ctgatttgatatgagttttatatgtcttctttttggagtaagttgtagttgattgcatcacaattattgataataaaaaattaaacgctttagagatcaa |
1214 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27490810 |
ctgatttgatatgagtttcatacgtcttcttttttgagtaagttgtacttgattgcatcacaattattgataataaaaaaataaacgctttagagatcaa |
27490909 |
T |
|
| Q |
1215 |
tctcatgttcgcctgcatatgaatttattgttat---------actattagttatgaataatggttgtaatgtaattcttttgtgtaaagttat |
1299 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27490910 |
tctcatgctcacctgcatatgaatttattgttatctatacataaattttagttatgaataatggttgtaatgtaattcttttgtgtaaagttat |
27491003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 2850 - 3595
Target Start/End: Original strand, 27493297 - 27494043
Alignment:
| Q |
2850 |
aatgcaggtcacttttatgtgtatgttcacttttattttctctagtaggctgatgtatttagctacactgagtaactaaacactataaattattattttt |
2949 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
27493297 |
aatgcaggtcacttttatgtgaatgttcacttttattttctctaga---ctgatctatttagctacagtgagtaactaaacactgtcaattattattttt |
27493393 |
T |
|
| Q |
2950 |
ctttgaacctctttttaatcgttggatccatgtgattatggttattccttttattgatgcaatttgaattatgattatttactatatcttgttcttaatg |
3049 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27493394 |
ctttgaacatctttttaatcgttggatccacgtgatcatggttattccttttattgatgcaatttgaattatgattatttactgtatcttgttcttaatg |
27493493 |
T |
|
| Q |
3050 |
cttttcaagttttgaccaacttgaatcaaatcta--ggttgtaactcactattggccgtaggttttgtaatcggaactagatatattagtcaataggata |
3147 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
27493494 |
ttttttaatttttgaccaacttgaatcaaatctataggttgtaaatcactattggccgttggttttgtaatcggatctagatatattagtcactaggata |
27493593 |
T |
|
| Q |
3148 |
atttccttagagatcatgagtatgcttagcatgactttgtctaacacttttgagaatataagtctgctaccaaccctagggagaaaaatcccgagaaggg |
3247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
27493594 |
atttccttagagatcatgagtatgcttagcatgactttgtctaacacttttgagaatataagtctgctaccaaccctagggagaaaaattccaagatggg |
27493693 |
T |
|
| Q |
3248 |
attgccactcgtaaacgggataggtctactttcttagtcgttgtgagcataaacttgaaattttagataaactaggaattggatttacccaacgaataga |
3347 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
27493694 |
attgccacttgtaaacgggataggtctactttcttagtcgttgtgagcgtaaacttgaaattttagataaactagaaactggatttatccaacgaatagt |
27493793 |
T |
|
| Q |
3348 |
gagatggaattcaaggaatcataatcgctttcaacattatgattgactttcttttaattttctttgcaacac-aaggcacacattattagagggctgtca |
3446 |
Q |
| |
|
||||| | |||||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
27493794 |
gagataggattcaaggaatcataatcacttttaacattatgattgactttctttttattttcattgcaacacaaaggcacacattattagagggctttca |
27493893 |
T |
|
| Q |
3447 |
tgtgttatcacttggcttaggtaagggatggacatttttggagtagtgttaaattagagttagg-ttctactacttattcttgatctattaagtatctcc |
3545 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
27493894 |
tgtgttatcacttggcttaggtaaggggtggacatttttggagtagtgttaaattagagttaggtttctactgcttattcttgatctattaggtatctcc |
27493993 |
T |
|
| Q |
3546 |
accactactaagcaattgtgcctttatcatttcataatgggtacaaagag |
3595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27493994 |
accactactaagcaattgtgcctttatcatttcataatgggtacaaagag |
27494043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 2155 - 2851
Target Start/End: Original strand, 27492405 - 27493097
Alignment:
| Q |
2155 |
ttaatgaacaatatcaatttattttattt-gttttcttgtaattaaaacaaatatacgtaccactctgcaaactttttatctaatcatacttagactatt |
2253 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27492405 |
ttaatgaacaatataagtttattttattttgtttttttataattaaaacaaatatac----cactttgcaaactttttatctaatcatacttagactatt |
27492500 |
T |
|
| Q |
2254 |
ctaggttgctttgttcgctcatttctatatgtgttttgagtttttcttttgtatagaacatggaattaatctacccaagaaatatcatggaagttaagga |
2353 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27492501 |
ctatgttgttttgttcgctcatttctatatgtgttttgagtttttcttttgtatagaacatggaattaatctacccaagaaatatcatggaagttaagga |
27492600 |
T |
|
| Q |
2354 |
agcaaggagcgcaatgaagttattgaagtctaaacaacttgaaaaatttctgtcccaaactca--aggatgaaaagcacatgaagaatgaagaaaaacaa |
2451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
27492601 |
agcaaggagcgcaatgaagttattgaagtctaaac---ttggaaaatttttgtcccaaactcataaggatgaaaagcacgtgaagaatgaagaaaaacaa |
27492697 |
T |
|
| Q |
2452 |
gaaaaatagcttctggtatgtgctcccccgttcatagactttgtacaccccacacgaactgaaggagacaaaggtagatattgttctcaggaataaaata |
2551 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27492698 |
gaaaaatagcttctggtatgtgctcacccgttcatagactttgtacacctcacacgcactgaaggagacaaaggtagatattgttctcaggaataaaata |
27492797 |
T |
|
| Q |
2552 |
ctttgtcgttaacaaattaataaatatttatcaatcactttctatgcatgtgcaaaatgatttaaaaatactatcatgaacgttagaagtgaacnnnnnn |
2651 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
27492798 |
ctttgtcggtaacaaattaataaatatttatcaatcactttctatgaatgtgcaaaatgatttaaaactactatcatgaatgttagaagtgaactttttt |
27492897 |
T |
|
| Q |
2652 |
ncttcatgcaaatgtgaatattatttgttactatatttcattttagaaagtatagtttccttgaaggtacttctaatgtgtccaatttcattcacttaag |
2751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27492898 |
tcttcatgcaaatgtgaatattatttgttactatatttcattttagaaagtatagtttccttgaaggtacttctaatgtgtccaatttcattcacttaag |
27492997 |
T |
|
| Q |
2752 |
ctatgccttgatcatgacataattcagttgatcataaaattgcaaatttaatttaaataacgttttaccagacaatcatggtccatggattatttcagaa |
2851 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27492998 |
ctatgctttgatcatgacataattcagttgatcataaaattgcaaatttaatttaaataactttttaccagacaatcatggtccatggattatttcagaa |
27493097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1255 - 1780
Target Start/End: Original strand, 27490998 - 27491518
Alignment:
| Q |
1255 |
agttatgaataatggttgtaatgtaattcttttgtgtaaagttatttatacatgaattttataataagtgcttgaaaagtagggaaattaatgtaaagga |
1354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27490998 |
agttatgaataatggttgtaatgtaattcttttgtgtaaagttatttatacataaattttataataagtgcttgaaaagtagggaaattaatgtaaagga |
27491097 |
T |
|
| Q |
1355 |
aatacataccacatgagaaaccatagtaaatgtttgctccttgtcgaacttcaaggaagttttgaaataaaaaattgatttagaatacaaatttgtgaag |
1454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27491098 |
aatacataccacatgagaaaccatagtaaatgtttgctccttgtcgaacttcaaggaagttttgaaataaaaaattg--gtagaatacaaatttgtgaag |
27491195 |
T |
|
| Q |
1455 |
ctgtggaggtcttgcctattttctacttttatagtaggaatttataaggttggcatagctttgnnnnnnnnnnnnnntccaaatcatatatgcg-nnnnn |
1553 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27491196 |
atgtggagatcttgcctattttctacttttatagtaggaatttataaggttggcatagctttg----aaaaaaaatatccaaatcatatatgcgtttttt |
27491291 |
T |
|
| Q |
1554 |
nnnaacaaatccaacgtatatgttgaatctctttcttcttgttgtcttatgtggtttctatttatagttaattagttccaacaagataacaaaatttgtt |
1653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27491292 |
tttaacaaatccaacgtatatgttgaatctctttcttcttgttgtcttatttggtttctatttatagttaattagttccaataagataacaaaatttgtt |
27491391 |
T |
|
| Q |
1654 |
tagcacttattttatatctggcaatgcaagtcattaggtataatatannnnnnnagctatttatgggtataataagttaatgtctattttagattacatt |
1753 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27491392 |
tagcacttattttatatctggcaatgcaagtcattaggtataatatatttttttagctatttatgggtataataagttgatgtctattttagattacatt |
27491491 |
T |
|
| Q |
1754 |
tcaccaaaaatatttcgcaatacaagc |
1780 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
27491492 |
tcaccaaatatatttcgcaatacaagc |
27491518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2039 - 2528
Target Start/End: Original strand, 27484490 - 27484992
Alignment:
| Q |
2039 |
atttatggtgtcacttttattaattatcatatatgattttaaataaaaattacattattgtatagtttacctaaataagatatagtttttatcttttgat |
2138 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27484490 |
atttatggtttcacttttattaattatcatatatgattttaaataaaaattacattattgtatagtttacctaaataagatatagtttttatcttttgat |
27484589 |
T |
|
| Q |
2139 |
nnnnnnn---------------ttcgggaagttaatgaacaatatcaatttattttatttgttttcttgtaattaaaacaaatatacgtaccactctgca |
2223 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
27484590 |
aaaaaaaattacaaagaaaaaattcgggaagttaatgaacaaaatcaatttattttatttgttttcttataattaaaacaaatatac----cactctgca |
27484685 |
T |
|
| Q |
2224 |
aactttttatctaatcatacttagactattctaggttgctttgttcgctcatttctatatgtgttttgagtttttcttttgtatagaacatggaattaat |
2323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
27484686 |
aactttttatctaatcatacttagactattctaggttgctttgttcgctcatttctgtatgtgttt-gagtttttattttgtatagaacatggaattaat |
27484784 |
T |
|
| Q |
2324 |
ctacccaagaaatatcatggaagttaaggaagcaaggagcgcaatgaagttattgaagtctaaacaacttgaaaaatttctgtcccaaactc--aaggat |
2421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27484785 |
ctacccaagaaatatcatggaagttaaggaagcaaggagcgcaatgaagttattgaagtctaaacaacttgaaaaatttctgtcccaaactcataaggat |
27484884 |
T |
|
| Q |
2422 |
gaaaagcacatgaagaatgaagaaaaacaagaaaaat-agcttctggtatgtgctcccccgttcatagactttgtacaccccacacgaactgaaggagac |
2520 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
27484885 |
gaaaagcacgtgaagaatgaagaaaaacaagaaaaataagcttctggtatgtgctcccccgttcacagactttctacaccccacacgcactgaagaagac |
27484984 |
T |
|
| Q |
2521 |
aaaggtag |
2528 |
Q |
| |
|
||| |||| |
|
|
| T |
27484985 |
aaaagtag |
27484992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 224; E-Value: 1e-122
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 27489682 - 27489977
Alignment:
| Q |
18 |
catatgagcagttccgtagataagataaccaccttttttcatagggaaacttgctttctgaacatggacagggtcactactattgtttccaggaataaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
27489682 |
catatgagcagttccgtagataagataaccacctttttccatagggaaacttgctttctgaacatggatagggtcactactattgtttccaggaataata |
27489781 |
T |
|
| Q |
118 |
tactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaatgtgccaaatgatttaaacctactatcatgagtgttagttagaagtgaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
27489782 |
tactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaaggttcaaaatgatttaaaattactatcatacgt----gttagaagtgaat |
27489877 |
T |
|
| Q |
218 |
ttatttttctttttgcatgcaaatgtgaatactatttgttactatatttcatgctagaaggtagagtttccttaaaagactttttaatatttccaaattc |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
27489878 |
ttatttttc-ttttgcatgcaaatgtgaatactatttgttactatatttcatgttagaaggtagagttttcttaaaagaccttttaatatttccaaattc |
27489976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 116; E-Value: 6e-58
Query Start/End: Original strand, 420 - 1052
Target Start/End: Original strand, 12600063 - 12600692
Alignment:
| Q |
420 |
ataaaatttaacggggatttgatgttcgttccagtcaacccacgttattttgtatcttatagcaagctttctacgtggtgctaggagtccctttttcaac |
519 |
Q |
| |
|
||||||| |||| || ||||| |||| || ||||| |||||| ||||| ||||||||||| ||||| ||| | | ||||||| | | ||||||| ||| |
|
|
| T |
12600063 |
ataaaatctaactggaatttggtgttggtcccagttaacccaggttatgttgtatcttatggcaagatttttccttggtgcttgaaatccctttctcatt |
12600162 |
T |
|
| Q |
520 |
ttgcactgaaatttgttgtggcaacaaaagattcctcctttatagtcatgggacaatggtttatcatggatatcatgtgtctcattataaaaattctttg |
619 |
Q |
| |
|
||||||||||| || | |||||||||| || || | ||||||| ||| | | || | || |||||| || |||| ||||||||||| | | || |
|
|
| T |
12600163 |
ttgcactgaaacttatcttggcaacaaaggactcatgctttatattcaggagtcact---tttccatggaatccaaatgtcacattataaaaaatttctg |
12600259 |
T |
|
| Q |
620 |
ggagattaaattggtcacacctacattcactacaacttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagccacttctctttcca |
719 |
Q |
| |
|
|||||||||| |||||||||||||||| | | ||| ||||| ||||||| | ||||||||||||||||| || | | || | ||| ||||||| ||| |
|
|
| T |
12600260 |
ggagattaaactggtcacacctacattgaatgcaaattttcttatttttagcgcctcgtgtatcaatgagcagcagacccaacaaccatttctcttccca |
12600359 |
T |
|
| Q |
720 |
gtcttttgtaatatttgcagggttacctacttcaaccgcaaaaggatctggaagctttgaaattgttcctcgtgattcacctcccaacccccaataaagt |
819 |
Q |
| |
|
||| ||||||||||||||||||||||| | ||||||||||||||| ||||| |||| |||||||||||||| ||||||||| | ||||| | | || |
|
|
| T |
12600360 |
cccttctgtaatatttgcagggttacctattccaaccgcaaaaggataaggaagttttgtaattgttcctcgtgtttcacctccagaaccccattgatgt |
12600459 |
T |
|
| Q |
820 |
ggaagaattaaatcgttgcaggttccttgatttctttttattatgggacccccaaacggttttgtattatcattggggtcgtgtgacatattcttat-ca |
918 |
Q |
| |
|
|||||||| || |||||| ||||| | ||||||||| | ||||| ||||| | ||||| |||| |||||| || |||||||||| | ||| | |
|
|
| T |
12600460 |
ggaagaataccattgttgcatgttccatcatttcttttgaaaatgggttccccataaggtttggtatgatcatttggatcgtgtgacactgacgtattct |
12600559 |
T |
|
| Q |
919 |
tcactttcatcatattttaaagcaaaccaatggtggatgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaagctct |
1018 |
Q |
| |
|
|| | | || |||||||||| | ||||||| || ||||| |||||||||||||||||| | || || ||||||||||||||||||| ||||||||||| |
|
|
| T |
12600560 |
tctttataat-atattttaaaatataccaatgatgaatgtaagtttcatacaatggtataaagtttccatgttcatcaactagatcaacatcaaagctct |
12600658 |
T |
|
| Q |
1019 |
tgactccaatatgaccccttgaaaattcaatatc |
1052 |
Q |
| |
|
||| ||||| ||||||| ||| |||||||||||| |
|
|
| T |
12600659 |
tgattccaacatgaccctttggaaattcaatatc |
12600692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 105; E-Value: 2e-51
Query Start/End: Original strand, 1846 - 1973
Target Start/End: Original strand, 27484293 - 27484418
Alignment:
| Q |
1846 |
aacaatttcaccgaatgaaaaatttatgaatcatacaaagtaaaattaatgttacctcatatacacacattaacggttggacgaaatatcgatttgcttt |
1945 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
27484293 |
aacaatttcaccgaatgaaaaatttatgaatcatacaaagtaaaattaatgttacctcatat--acacattaaccgttggacgaaatatcgatttccttt |
27484390 |
T |
|
| Q |
1946 |
ttaaatatataacaatgtctatctccct |
1973 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
27484391 |
ttaaatatacaacaatgtctatctccct |
27484418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 87; E-Value: 1e-40
Query Start/End: Original strand, 2530 - 2831
Target Start/End: Original strand, 27489762 - 27490066
Alignment:
| Q |
2530 |
tattgttctcaggaataaaatactttgtcgttaacaaattaataaatatttatcaatcactttctatgcatgtgcaaaatgatttaaaaatactatcatg |
2629 |
Q |
| |
|
||||||| ||||||||| ||||| |||| || |||||||| |||||||| | |||||||||||||| | || ||||||||||||||| ||||||||| |
|
|
| T |
27489762 |
tattgtttccaggaataatatactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaaggttcaaaatgatttaaaattactatcata |
27489861 |
T |
|
| Q |
2630 |
aacgttagaagtgaacnnnnnnn-ctt---catgcaaatgtgaatattatttgttactatatttcattttagaaagtatagtttccttgaaggtacttct |
2725 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||||| ||| ||||| ||| || | ||| | |
|
|
| T |
27489862 |
cgtgttagaagtgaatttatttttcttttgcatgcaaatgtgaatactatttgttactatatttcatgttagaaggtagagttttcttaaaagacctttt |
27489961 |
T |
|
| Q |
2726 |
aatgtgtccaatttcattcacttaagctatgccttgatcatgacataattcagttgatcataaaattgcaaatttaatttaaataacgttttaccagaca |
2825 |
Q |
| |
|
||| | ||||| ||||||||||||||||| | |||||| ||| |||| |||| ||| ||||||||||| ||||| ||||||| |||| |||||||||||| |
|
|
| T |
27489962 |
aatatttccaaattcattcacttaagctacgtcttgatgatggcatagttcaattgttcataaaattgaaaattgaatttaagtaac-ttttaccagaca |
27490060 |
T |
|
| Q |
2826 |
atcatg |
2831 |
Q |
| |
|
|||||| |
|
|
| T |
27490061 |
atcatg |
27490066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 83; E-Value: 3e-38
Query Start/End: Original strand, 98 - 290
Target Start/End: Original strand, 27492776 - 27492959
Alignment:
| Q |
98 |
tattgtttccaggaataaaatactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaatgtgccaaatgatttaaacctactatcatg |
197 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||| |||||||| |||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
27492776 |
tattgttctcaggaataaaatactttgtcggtaacaaattaataaatatttatcaatcactttctatgaatgtgcaaaatgatttaaaactactatcatg |
27492875 |
T |
|
| Q |
198 |
agtgttagttagaagtgaatttatttttctttttgcatgcaaatgtgaatactatttgttactatatttcatgctagaaggtagagtttcctt |
290 |
Q |
| |
|
| | |||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
27492876 |
aat----gttagaagtgaactt-tttttctt----catgcaaatgtgaatattatttgttactatatttcattttagaaagtatagtttcctt |
27492959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 64; E-Value: 7e-27
Query Start/End: Original strand, 2040 - 2127
Target Start/End: Original strand, 27492263 - 27492350
Alignment:
| Q |
2040 |
tttatggtgtcacttttattaattatcatatatgattttaaataaaaattacattattgtatagtttacctaaataagatatagtttt |
2127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||| |||||||||||| |
|
|
| T |
27492263 |
tttatggtgtcacttttattaattatcatatatgactttaaataaaaattacatcattgtataatttatataaatgagatatagtttt |
27492350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-21
Query Start/End: Original strand, 2541 - 2713
Target Start/End: Original strand, 27482573 - 27482749
Alignment:
| Q |
2541 |
ggaataaaatactttgtcgttaacaaattaataaatatttatcaatcactttctatgcatgtgcaaaatgatttaaaaatactatcatgaacgttagaag |
2640 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||||||| | |||||||||||||| | || ||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
27482573 |
ggaataaaatactctgtctgtggcaaattaagaaatatttgttaatcactttctatgaaggttcaaaatgatttaaaactactatcataagtgttagaag |
27482672 |
T |
|
| Q |
2641 |
tgaacnnnnnnnctt----catgcaaatgtgaatattatttgttactatatttcattttagaaagtatagtttcctt |
2713 |
Q |
| |
|
||||| || |||||||||||||||| ||| |||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
27482673 |
tgaactttttttttttttgcatgcaaatgtgaatactatctgttactatatttcatgttagaaggtagagtttcctt |
27482749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000004
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 27493018 - 27493144
Alignment:
| Q |
313 |
aattcagttgttcataaaattgaaaattgaatttaaataa-tttttaccagacaat-------catgtattgttttagaaccatctgttttgacacgatc |
404 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |||| ||| ||| ||||||| |||||| |||||||| |
|
|
| T |
27493018 |
aattcagttgatcataaaattgcaaatttaatttaaataactttttaccagacaatcatggtccatggattatttcagaaccacttgttttaacacgatc |
27493117 |
T |
|
| Q |
405 |
agtggaatccatcacataaaatttaac |
431 |
Q |
| |
|
|||||||| || ||||||||| |||| |
|
|
| T |
27493118 |
ggtggaatcaattacataaaatctaac |
27493144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 1913 - 1970
Target Start/End: Original strand, 27492198 - 27492255
Alignment:
| Q |
1913 |
cattaacggttggacgaaatatcgatttgctttttaaatatataacaatgtctatctc |
1970 |
Q |
| |
|
||||||| ||||||| ||| |||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
27492198 |
cattaaccgttggaccaaacatcgatttcctttttaaatatacaacaatgtctatctc |
27492255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.0000000004
Query Start/End: Original strand, 2772 - 2831
Target Start/End: Original strand, 27482772 - 27482830
Alignment:
| Q |
2772 |
aattcagttgatcataaaattgcaaatttaatttaaataacgttttaccagacaatcatg |
2831 |
Q |
| |
|
|||||| ||| ||||||||||| ||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
27482772 |
aattcaattgttcataaaattgaaaattgaatttaaataac-ttttaccagacaatcatg |
27482830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 1153 - 1223
Target Start/End: Original strand, 12600790 - 12600860
Alignment:
| Q |
1153 |
taagttgtagttgattgcatcacaattattgataataaaaaattaaacgctttagagatcaatctcatgtt |
1223 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||| | ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
12600790 |
taagttgtgcttgatagcatcacaagtattgataatgagaaaataaacgatttagagattaatctcatgtt |
12600860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 3686 - 3728
Target Start/End: Original strand, 27494121 - 27494163
Alignment:
| Q |
3686 |
tcttgattctttgattctctcttactccacctccatcttagaa |
3728 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27494121 |
tcttgattctttgattctcttgtactccacctccatcttagaa |
27494163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000006
Query Start/End: Original strand, 1557 - 1686
Target Start/End: Original strand, 27493182 - 27493307
Alignment:
| Q |
1557 |
aacaaatccaacgta-tatgttgaatctctttcttcttgttgtcttatgtggtttctatttatagttaattagttccaacaagataacaaaatttgttta |
1655 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| ||||||||| || | ||||| |||||| |||| |||||| || |||| ||||| | |
|
|
| T |
27493182 |
aacaaatccaacgtaatatgttgaatccttttcttcttgtgttcttatgtg--ttttttttatggttaatcagtttcaacaa---aaaaaaaattgttaa |
27493276 |
T |
|
| Q |
1656 |
gcacttattttatatctggcaatgcaagtca |
1686 |
Q |
| |
|
|||||| || ||||||||||||||| |||| |
|
|
| T |
27493277 |
gcactttgttgatatctggcaatgcaggtca |
27493307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3006 - 3062
Target Start/End: Original strand, 26884144 - 26884200
Alignment:
| Q |
3006 |
atgcaatttgaattatgattatttactatatcttgttcttaatgcttttcaagtttt |
3062 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||| |||||| ||||||| |||| |
|
|
| T |
26884144 |
atgcaatttgaattatgtttatttattaaatcttgtttttaatgtttttcaattttt |
26884200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000009
Query Start/End: Original strand, 2998 - 3041
Target Start/End: Original strand, 45702526 - 45702569
Alignment:
| Q |
2998 |
ttttattgatgcaatttgaattatgattatttactatatcttgt |
3041 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
45702526 |
ttttattgatgcaatttgaattatgcttattttatatatcttgt |
45702569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 12599652 - 12599706
Alignment:
| Q |
32 |
cgtagataagataaccaccttttttcatagggaaacttgctttctgaacatggac |
86 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||||||| ||||| ||||| |
|
|
| T |
12599652 |
cgtagataagataaccacctttctccatagggatgcttgctttttgaacgtggac |
12599706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 313 - 983
Target Start/End: Complemental strand, 2308648 - 2307976
Alignment:
| Q |
313 |
aattcagttgttcataaaattgaaaattgaatttaaataatttttaccagacaatcatgtattgttttagaaccatctgttttgacacgatcagtggaat |
412 |
Q |
| |
|
|||| ||||| | ||||||||||||||| || ||| || | |||||||||||||||||| ||||| | | |||||| |||||||| |||||||||||| |
|
|
| T |
2308648 |
aatttagttgatgataaaattgaaaatttaagttatatgaattttaccagacaatcatggattgtgtcaaaaccatttgttttgaa--gatcagtggaat |
2308551 |
T |
|
| Q |
413 |
ccatcacataaaatttaacggggatttgatgttcgttccagt----caacccacgttattttgtatcttatagcaagctttctacgtggtgctaggagtc |
508 |
Q |
| |
|
| | | ||||||| |||| | ||||||| ||| || ||| | |||||||| ||||||||||||||| |||||| ||||||||||||||| ||| || |
|
|
| T |
2308550 |
caagtatataaaatctaacagagatttgacgttggtcccattaattcaacccacattattttgtatcttagagcaagttttctacgtggtgcttggaatc |
2308451 |
T |
|
| Q |
509 |
cctttttcaacttgcactgaaatttgttgtggcaacaaaagattcctcctttatagtcatggg-acaatggtttatcatggatatcatgtgtctcattat |
607 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||||||||||||| |||||||| ||| |||| |||||| ||||||||||||||||| | |||| |
|
|
| T |
2308450 |
cctttctcaacttgcacagaaaaccattgtggcaacaaaagattcctcccttatagtcggggggacaacggtttaccatggatatcatgtgtcacgttat |
2308351 |
T |
|
| Q |
608 |
aaaaattctttgggagattaaattggtcacacctacattcactacaacttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagcca |
707 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| || || |||||||| | || || |||||| ||||||||||||| ||||| | ||| || || |
|
|
| T |
2308350 |
aaaaatcctttgggagattaaattgatcacacctacactcgctgcaactttttcgatcttctgtgccacgtgtatcaatgatcatgataagaaatagtca |
2308251 |
T |
|
| Q |
708 |
cttctctttccagtcttttgtaatatttgcagggttacctacttcaaccgcaaaaggatctggaagctttgaaattgttcctcgtgattcacctcccaac |
807 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
2308250 |
tttctcttttcaggcttttgtaatatttacagggttacctacttcaagtgcaaaaggatctggaagctttgaaattgttcctcgtgattcacttcctaaa |
2308151 |
T |
|
| Q |
808 |
ccccaataaagtggaagaattaaatcgttgcaggttccttgatttctttttattatgggacccccaaacggttttgtattatcattggggtcgtgtgaca |
907 |
Q |
| |
|
||||||||| |||||||||| ||||| ||| ||| | ||||||||||| || | || ||||||| ||||| |||| ||| ||||||||||||| || |
|
|
| T |
2308150 |
ccccaataatgtggaagaatatctccgttgaaggatccattatttcttttta-taagagaaccccaaaaggtttggtatgatctttggggtcgtgtgtca |
2308052 |
T |
|
| Q |
908 |
tattcttatcatcactttcatcatattttaaagcaaaccaatggtggatgtatgtttcatacaatggtatagaatt |
983 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2308051 |
tattcttatcatcactttcatcatattttaaagcaaactaatgatggatgtatgtttcatacaatggtatagaatt |
2307976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-42
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 2308982 - 2308707
Alignment:
| Q |
18 |
catatgagcagttccgtagata--agataaccacc------ttttttcatagggaaacttgctttctgaacatggacagggtcactactattgtttccag |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||||| ||||||||||| |||||||||||| |
|
|
| T |
2308982 |
catatgagcagttccgtagatataagataaccaccattttttttttttatagggattcttgctttttgaacattgacagggtcaccactattgtttcctt |
2308883 |
T |
|
| Q |
110 |
gaataaaatactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaatgtgccaaatgatttaaacctactatcatgagtgttagttag |
209 |
Q |
| |
|
||||| ||| |||| ||||| |||||||| |||| ||||||||||||||||||||||| ||| |||||||||||| | || || | || |||| |
|
|
| T |
2308882 |
gaatagtatagtctgcctgtaacaaattaaaaaatctttgttaatcactttctatgaatttgcaaaatgatttaaaaatgtta--attaacgt--gttat |
2308787 |
T |
|
| Q |
210 |
aagtgaatttatttttctttttgcatgcaaatgtgaatactatttgttactatatttcatgctagaaggtagagtttcctt |
290 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||| ||||| ||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
2308786 |
aagtgaacttatttttc-ttttgcttgcaaatgagaatattatttgttactatatttcatgttataaagtagagtttcctt |
2308707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-38
Query Start/End: Original strand, 2658 - 2832
Target Start/End: Complemental strand, 2308762 - 2308589
Alignment:
| Q |
2658 |
tgcaaatgtgaatattatttgttactatatttcattttagaaagtatagtttccttgaaggtacttctaatgtgtccaatttcattcacttaagctatgc |
2757 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||| | || |||||||||||| || |||||||||||| |||| | |
|
|
| T |
2308762 |
tgcaaatgagaatattatttgttactatatttcatgttataaagtagagtttccttggacgtccttctaatgtgttcatgttcattcacttatgctacga |
2308663 |
T |
|
| Q |
2758 |
cttgatcatgacataattcagttgatcataaaattgcaaatttaatttaaataacgttttaccagacaatcatgg |
2832 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| |||||||| ||| || | ||||||||||||||||||| |
|
|
| T |
2308662 |
cttgatcatgagataatttagttgatgataaaattgaaaatttaagttatatga-attttaccagacaatcatgg |
2308589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-25
Query Start/End: Original strand, 1394 - 1517
Target Start/End: Complemental strand, 2307954 - 2307833
Alignment:
| Q |
1394 |
cttgtcgaacttcaaggaagttttgaaataaaaaattgatttagaatacaaatttgtgaagctgtggaggtcttgcctattttctacttttatagtagga |
1493 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||||| | ||||| || |||||||||| |||||||||| ||| ||||||||||||||||||||| | |
|
|
| T |
2307954 |
cttgttgaacttctaggaagttttgaaaataaaaattcgt--agaattcagatttgtgaagatgtggaggtcgtgcatattttctacttttatagtagaa |
2307857 |
T |
|
| Q |
1494 |
atttataaggttggcatagctttg |
1517 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2307856 |
atttataaggttggcataactttg |
2307833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 0.000000000000002
Query Start/End: Original strand, 418 - 688
Target Start/End: Complemental strand, 12017344 - 12017077
Alignment:
| Q |
418 |
acataaaatttaacggggatttgatgttcgttccagtcaacccacgttattttgtatcttatagcaagctttctacgtggtgctaggagtccctttttca |
517 |
Q |
| |
|
||||||||| |||| || ||||| |||| || ||||| |||||| ||||| ||||||||||| ||||| ||||| | ||||||| | | ||||||| ||| |
|
|
| T |
12017344 |
acataaaatctaactggaatttggtgttggtcccagttaacccaggttatgttgtatcttatggcaagatttctccttggtgcttgaaatccctttatca |
12017245 |
T |
|
| Q |
518 |
acttgcactgaaatttgttgtggcaacaaaagattcctcctttatagtcatgggacaatggtttatcatggatatcatgtgtctcattataaaaattctt |
617 |
Q |
| |
|
||||| ||||| || | |||||||||| || |||| ||||||| ||||| | || ||| |||||| || ||| ||| ||||||||| |
|
|
| T |
12017244 |
ttttgcattgaaacttatcttggcaacaaaggactcctgctttatattcatgagtca---cttttccatggaatccaacagtcacatcataaaaatttgc |
12017148 |
T |
|
| Q |
618 |
tgggagattaaattggtcacacctacattcactacaacttttcctattttttgtgcctcgtgtatcaatga |
688 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||| ||||| |||||| | ||||||||||||||||| |
|
|
| T |
12017147 |
agggagattaaactggtcacacctacattgaatacaaattttcttattttcagcgcctcgtgtatcaatga |
12017077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 930 - 1051
Target Start/End: Complemental strand, 12016835 - 12016714
Alignment:
| Q |
930 |
atattttaaagcaaaccaatggtggatgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaagctcttgactccaata |
1029 |
Q |
| |
|
|||||||||| | ||||||| || ||||| ||||||| |||||||| || || || ||||||||||||||||||| || || |||||| | ||||| | |
|
|
| T |
12016835 |
atattttaaaatataccaatgatgaatgtaagtttcatgcaatggtacggagtttccatgttcatcaactagatcaacataaatgctcttaattccaaca |
12016736 |
T |
|
| Q |
1030 |
tgaccccttgaaaattcaatat |
1051 |
Q |
| |
|
|||||| ||| ||| ||||||| |
|
|
| T |
12016735 |
tgacccattggaaactcaatat |
12016714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000004
Query Start/End: Original strand, 2561 - 2620
Target Start/End: Complemental strand, 2308863 - 2308804
Alignment:
| Q |
2561 |
taacaaattaataaatatttatcaatcactttctatgcatgtgcaaaatgatttaaaaat |
2620 |
Q |
| |
|
||||||||||| |||| ||| | |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2308863 |
taacaaattaaaaaatctttgttaatcactttctatgaatttgcaaaatgatttaaaaat |
2308804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000006
Query Start/End: Original strand, 2212 - 2261
Target Start/End: Complemental strand, 2307477 - 2307428
Alignment:
| Q |
2212 |
taccactctgcaaactttttatctaatcatacttagactattctaggttg |
2261 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2307477 |
taccactttgcgaactttttatccaatcatacttagactattttaggttg |
2307428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-39; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-39
Query Start/End: Original strand, 342 - 1051
Target Start/End: Original strand, 14624201 - 14624909
Alignment:
| Q |
342 |
aatttaaataattt--ttaccagacaatcatgtattgttttagaaccatctgttttgacacgatcagtggaatccatcacataaaatttaacggggattt |
439 |
Q |
| |
|
||||||||| |||| ||||| ||||||| || ||||||| |||||||| |||| | || ||||||||| || | ||||||||| |||| | || |
|
|
| T |
14624201 |
aatttaaattatttacttacccgacaatcgtggattgtttcagaaccatttgttgtcacccgatcagtgacgtcaagtacataaaatctaactgcagatt |
14624300 |
T |
|
| Q |
440 |
gatgttcgttccagtcaacccacgttattttgtatcttatagcaagctttctacgtggtgctaggagtccctttttcaacttgcactgaaatttgttgtg |
539 |
Q |
| |
|
| |||| || ||||| |||||| ||||| ||||||||||| ||||| ||||| | ||||||| | | ||||||| ||| |||||||||||||| | || |
|
|
| T |
14624301 |
ggtgttggtcccagttaacccaggttatgttgtatcttatggcaagatttctccttggtgcttgaaatccctttctcattttgcactgaaatttatcttg |
14624400 |
T |
|
| Q |
540 |
gcaacaaaagattcctcctttatagtcatgggacaatggtttatcatggatatcatgtgtctcattataaaaattctttgggagattaaattggtcacac |
639 |
Q |
| |
|
|||||||| || |||| ||||||| ||| | | || | || |||||| || |||| ||| ||||||||| | ||||||||||| ||||||||| |
|
|
| T |
14624401 |
gcaacaaaggactcctgctttatattcaggagtcact---tttccatggaatccaactgtcacatcataaaaattttcagggagattaaactggtcacac |
14624497 |
T |
|
| Q |
640 |
ctacattcactacaacttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagccacttctctttccagtcttttgtaatatttgcag |
739 |
Q |
| |
|
||||||| | ||||| ||||| |||||| ||||||||||||||||| || ||| || | ||| | ||||| ||| ||| |||||||| ||||| |
|
|
| T |
14624498 |
ctacattgagtacaaattttcttattttcaacgcctcgtgtatcaatgaccagcacacccaacaaccattgctcttcccacccttctgtaatatctgcag |
14624597 |
T |
|
| Q |
740 |
ggttacctacttcaaccgcaaaaggatctggaagctttgaaattgttcctcgtgattcacctcccaacccccaataaagtggaagaattaaatcgttgca |
839 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||| |||| | |||||||||| | ||||| ||| | | ||| | | |||||||||| | |||||| |
|
|
| T |
14624598 |
ggttacctatttcaaccgcaaatggataaggaagttttgtacttgttcctcgcgtttcacttccagaactccattgatgtggaagaataccgttgttgca |
14624697 |
T |
|
| Q |
840 |
ggttccttgatttctttttattatgggacccccaaacggttttgtattatcattggggtcgtgtgacatattcttat-catcactttcatcatattttaa |
938 |
Q |
| |
|
||||| | ||||||||| ||| || ||||| | ||||| |||| |||||| || || |||||||| | ||| | || | | || ||||||||| |
|
|
| T |
14624698 |
cgttccatcatttcttttgtaaatgagatccccagaaggtttggtatgatcatttggatcttgtgacattgacatattcttctttataat-atattttaa |
14624796 |
T |
|
| Q |
939 |
agcaaaccaatggtggatgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaagctcttgactccaatatgacccctt |
1038 |
Q |
| |
|
| ||||||||| || ||||| ||||||| |||||||| | | || || ||||||||||||||||||| |||||||||||||| ||||| ||||||| || |
|
|
| T |
14624797 |
aataaaccaatgatgaatgtaagtttcatgcaatggtacaaagtttccatgttcatcaactagatcaacatcaaagctcttgattccaacatgacccttt |
14624896 |
T |
|
| Q |
1039 |
gaaaattcaatat |
1051 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
14624897 |
ggaaattcaatat |
14624909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000004
Query Start/End: Original strand, 3006 - 3117
Target Start/End: Complemental strand, 32494196 - 32494084
Alignment:
| Q |
3006 |
atgcaatttgaattatgattatttactatatcttgttcttaatgcttttcaagttttgaccaac-ttgaatcaaatctaggttgtaactcactattggcc |
3104 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||||||||||||||| || | |||| |||||| || ||||||||| | |||||||| ||| |
|
|
| T |
32494196 |
atgcaattcaaattatgtttatttaatatatcttgttcttaatgcttttcaatttcacatcaactttgaattgaacctaggttgtgaatcactattagcc |
32494097 |
T |
|
| Q |
3105 |
gtaggttttgtaa |
3117 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32494096 |
ctaggttttgtaa |
32494084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 14623862 - 14623915
Alignment:
| Q |
32 |
cgtagataagataaccaccttttttcatagggaaacttgctttctgaacatgga |
85 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
14623862 |
cgtagataagataaccacctttcttcatagggatgcttgctttttgaacgtgga |
14623915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1153 - 1223
Target Start/End: Original strand, 14625008 - 14625078
Alignment:
| Q |
1153 |
taagttgtagttgattgcatcacaattattgataataaaaaattaaacgctttagagatcaatctcatgtt |
1223 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||| ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
14625008 |
taagttgtgcttgatagcatcacaaatattgataatgggaaaataaacgatttagagattaatctcatgtt |
14625078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-28; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-28
Query Start/End: Original strand, 356 - 1051
Target Start/End: Original strand, 34211677 - 34212369
Alignment:
| Q |
356 |
ttaccagacaatcatgtattgttttagaaccatctgttttgacacgatcagtggaatccatcacataaaatttaacggggatttgatgttcgttccagtc |
455 |
Q |
| |
|
||||| |||||| || ||||||| |||||||| |||| | || ||||||||| || | ||||||||| |||| || ||||| |||| || ||||| |
|
|
| T |
34211677 |
ttacctgacaattgtggattgtttcagaaccatttgttgttacccgatcagtgacgtcaagtacataaaatctaactggaatttggtgttggtcccagtt |
34211776 |
T |
|
| Q |
456 |
aacccacgttattttgtatcttatagcaagctttctacgtggtgctaggagtccctttttcaacttgcactgaaatttgttgtggcaacaaaagattcct |
555 |
Q |
| |
|
|||||| ||||| |||||| |||| ||||| ||||| | ||||||| | | ||||||| ||| ||||||||||| || | || ||||||| || |||| |
|
|
| T |
34211777 |
aacccaagttatgttgtattttatggcaagatttctccttggtgcttgaaatccctttctcattttgcactgaaacttatcttgacaacaaaggactcct |
34211876 |
T |
|
| Q |
556 |
cctttatagtcatgggacaatggtttatcatggatatcatgtgtctcattataaaaattctttgggagattaaattggtcacacctacattcactacaac |
655 |
Q |
| |
|
||||||| || | | || | || |||||| || |||| ||| ||||||||| | |||||||||||||||||||||||||||| | ||||| |
|
|
| T |
34211877 |
gctttatattcgggagtcact---tttccatggaatccaactgtcacatcataaaaattttcagggagattaaattggtcacacctacattgaatacaaa |
34211973 |
T |
|
| Q |
656 |
ttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagccacttctctttccagtcttttgtaatatttgcagggttacctacttcaac |
755 |
Q |
| |
|
|||| |||||| | ||||||||||||||||| || ||| || | ||| | ||||| ||| ||| |||||||| |||| ||||||||| |||||| |
|
|
| T |
34211974 |
tttttttattttcagcgcctcgtgtatcaatgaccagcacacccaacaaccattgctcttcccacccttctgtaatatctgcacggttacctatttcaac |
34212073 |
T |
|
| Q |
756 |
cgcaaaaggatctggaagctttgaaattgttcctcgtgattcacctcccaacccccaataaagtggaagaattaaatcgttgcaggttccttgatttctt |
855 |
Q |
| |
|
||||| |||| ||||| |||| | |||||||||||| ||||| ||| | | ||| | | |||||||||| || |||||| ||||| | ||||||| |
|
|
| T |
34212074 |
tgcaaatggataaggaagttttgtacttgttcctcgtgtttcacttccagaactccattgatgtggaagaataccattgttgcatgttccatcatttctt |
34212173 |
T |
|
| Q |
856 |
tttattatgggacccccaaacggttttgtattatcattggggtcgtgtgacatattcttatcatcactttcatcatattttaaagcaaaccaatggtgga |
955 |
Q |
| |
|
|| ||| || ||||| | ||||| ||| |||||| || | || |||| | ||| | || || |||||||||| ||||||||| || | |
|
|
| T |
34212174 |
ttgtaaatgagatccccagaaggtttgctatgatcatttggattttgcgacactgacatattcttctttatattatattttaaaataaaccaatgatgaa |
34212273 |
T |
|
| Q |
956 |
tgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaagctcttgactccaatatgaccccttgaaaattcaatat |
1051 |
Q |
| |
|
|||| ||||||| |||||||| ||| || || ||||||||||||||||||| |||||| ||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
34212274 |
tgtaagtttcatgcaatggtacagagtttccatgttcatcaactagatcaacatcaaaactcttgattccaacatgaccctttggaaattcaatat |
34212369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 791
Target Start/End: Original strand, 34124484 - 34124854
Alignment:
| Q |
418 |
acataaaatttaacggggatttgatgttcgttccagtcaacccacgttattttgtatcttatagcaagctttctacgtggtgctaggagtccctttttca |
517 |
Q |
| |
|
||||||||| |||| || ||||| | || || ||||| |||||| ||||| ||||||||||| ||||| ||||| | ||||||| | | ||| ||| ||| |
|
|
| T |
34124484 |
acataaaatctaactggaatttggtattggtcccagttaacccaggttatgttgtatcttatggcaagatttctccttggtgcttgaaatccttttctca |
34124583 |
T |
|
| Q |
518 |
acttgcactgaaatttgttgtggcaacaaaagattcctcctttatagtcatgggacaatggtttatcatggatatcatgtgtctcattataaaaattctt |
617 |
Q |
| |
|
||||||||||| || | |||||||||| || |||| ||||||| || | | ||| || |||||| || |||| ||| ||||||||| | |
|
|
| T |
34124584 |
ttttgcactgaaacttatcttggcaacaaaggactcctgctttatattcgggagtaaat---tttccatggaatccaattgtcacatcataaaaattttc |
34124680 |
T |
|
| Q |
618 |
tgggagattaaattggtcacacctacattcactacaacttttcctattttttgtgcctcgtgtatcaatgaacatgacataaaagagccacttctctttc |
717 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||| ||||| |||||| | ||||||||||||||||| || ||| || | ||| | ||||| | |
|
|
| T |
34124681 |
agggagattaaactggtcacacctacattgaacacaaattttcttattttcagcgcctcgtgtatcaatgaccagcacacccaacaaccattgctcttcc |
34124780 |
T |
|
| Q |
718 |
cagtcttttgtaatatttgcagggttacctacttcaaccgcaaaaggatctggaagctttgaaattgttcctcg |
791 |
Q |
| |
|
|| ||| |||||||| |||| ||||||| | |||||||||| | |||| ||||| |||| | |||||||||| |
|
|
| T |
34124781 |
cacccttctgtaatatctgcatggttaccaatttcaaccgcatatggataaggaagttttgtacttgttcctcg |
34124854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 34124993 - 34125114
Alignment:
| Q |
930 |
atattttaaagcaaaccaatggtggatgtatgtttcatacaatggtatagaattcccttgttcatcaactagatcaatatcaaagctcttgactccaata |
1029 |
Q |
| |
|
|||||||||| ||||||||| || ||||| ||||||| ||||||| | | || || ||||||| ||||||||||| |||||||||| ||| ||||| | |
|
|
| T |
34124993 |
atattttaaaataaaccaatgatgaatgtaagtttcatgtaatggtacaaagtttccatgttcattaactagatcaacatcaaagctcgtgattccaaca |
34125092 |
T |
|
| Q |
1030 |
tgaccccttgaaaattcaatat |
1051 |
Q |
| |
|
||||| ||| |||||| |||| |
|
|
| T |
34125093 |
tgaccttttggaaattcgatat |
34125114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 34124062 - 34124115
Alignment:
| Q |
32 |
cgtagataagataaccaccttttttcatagggaaacttgctttctgaacatgga |
85 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
34124062 |
cgtagataagataaccacctttcttcatagggatgcttgctttttgaacgtgga |
34124115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 2994 - 3030
Target Start/End: Original strand, 10572376 - 10572412
Alignment:
| Q |
2994 |
ttccttttattgatgcaatttgaattatgattattta |
3030 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10572376 |
ttccttttattgatgcaatttgaattatgtttattta |
10572412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 1163 - 1223
Target Start/End: Original strand, 34212478 - 34212538
Alignment:
| Q |
1163 |
ttgattgcatcacaattattgataataaaaaattaaacgctttagagatcaatctcatgtt |
1223 |
Q |
| |
|
||||| ||||||||| |||||||||| | ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
34212478 |
ttgatagcatcacaagtattgataatgagaaaataaacgatttagagattaatctcatgtt |
34212538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3003 - 3053
Target Start/End: Complemental strand, 22472087 - 22472037
Alignment:
| Q |
3003 |
ttgatgcaatttgaattatgattatttactatatcttgttcttaatgcttt |
3053 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
22472087 |
ttgatgcaatttgaattatatttatttaagaaatcttgttcttaatgcttt |
22472037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 3003 - 3057
Target Start/End: Complemental strand, 9848744 - 9848690
Alignment:
| Q |
3003 |
ttgatgcaatttgaattatgattatttactatatcttgttcttaatgcttttcaa |
3057 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
9848744 |
ttgatgcaatttgaattatgattgtttaatatatcttgttcttaatgtttttcaa |
9848690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000009
Query Start/End: Original strand, 3512 - 3579
Target Start/End: Original strand, 46965876 - 46965943
Alignment:
| Q |
3512 |
tctactacttattcttgatctattaagtatctccaccactactaagcaattgtgcctttatcatttca |
3579 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||| | ||| ||||| ||||||||| |||| |||| |
|
|
| T |
46965876 |
tctactactcattcttgatctattaaatatttccacgattaccaagcacttgtgccttaatcaattca |
46965943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000009
Query Start/End: Original strand, 3003 - 3054
Target Start/End: Original strand, 7888432 - 7888483
Alignment:
| Q |
3003 |
ttgatgcaatttgaattatgattatttactatatcttgttcttaatgctttt |
3054 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | |||| ||| ||||||| |
|
|
| T |
7888432 |
ttgatgcaatttgaattatgcttatttactataacctgtttttactgctttt |
7888483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University