View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1549_low_10 (Length: 244)

Name: NF1549_low_10
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1549_low_10
NF1549_low_10
[»] chr3 (35 HSPs)
chr3 (168-228)||(35537476-35537536)
chr3 (74-140)||(46907950-46908016)
chr3 (68-140)||(23819359-23819431)
chr3 (60-140)||(43120940-43121020)
chr3 (85-140)||(15481049-15481104)
chr3 (77-140)||(24925968-24926031)
chr3 (37-140)||(42674681-42674784)
chr3 (62-140)||(36709703-36709781)
chr3 (84-140)||(962453-962509)
chr3 (67-140)||(19919502-19919575)
chr3 (87-140)||(36731687-36731740)
chr3 (84-140)||(2365072-2365128)
chr3 (36-72)||(35537559-35537595)
chr3 (85-140)||(11584872-11584927)
chr3 (85-140)||(53942040-53942095)
chr3 (85-140)||(55367403-55367458)
chr3 (84-138)||(6825608-6825662)
chr3 (84-140)||(14863746-14863802)
chr3 (84-140)||(16179734-16179790)
chr3 (84-140)||(21739778-21739834)
chr3 (84-140)||(30166613-30166669)
chr3 (84-140)||(31675725-31675781)
chr3 (84-140)||(31920642-31920698)
chr3 (84-140)||(34332105-34332161)
chr3 (84-140)||(40513014-40513070)
chr3 (84-140)||(48569313-48569369)
chr3 (85-140)||(17077588-17077643)
chr3 (85-136)||(25388163-25388214)
chr3 (95-140)||(19891471-19891516)
chr3 (95-140)||(52907343-52907388)
chr3 (92-140)||(10868438-10868486)
chr3 (68-140)||(17271016-17271088)
chr3 (84-140)||(18381842-18381898)
chr3 (84-140)||(34830186-34830242)
chr3 (96-140)||(50545037-50545081)
[»] chr4 (33 HSPs)
chr4 (74-143)||(8935865-8935934)
chr4 (77-140)||(29553084-29553147)
chr4 (74-138)||(42779046-42779110)
chr4 (77-140)||(19115230-19115293)
chr4 (37-140)||(26694722-26694825)
chr4 (74-138)||(2072336-2072400)
chr4 (84-140)||(19733278-19733334)
chr4 (68-140)||(34976735-34976807)
chr4 (74-133)||(10562604-10562663)
chr4 (74-140)||(19648489-19648555)
chr4 (59-140)||(1827805-1827886)
chr4 (84-140)||(23641881-23641937)
chr4 (84-140)||(23647539-23647595)
chr4 (84-140)||(42952821-42952877)
chr4 (84-140)||(48312888-48312944)
chr4 (84-140)||(54482450-54482506)
chr4 (82-136)||(20396380-20396434)
chr4 (74-140)||(38296499-38296565)
chr4 (96-138)||(53486231-53486273)
chr4 (95-140)||(15741014-15741059)
chr4 (84-140)||(7662598-7662654)
chr4 (80-140)||(14538276-14538336)
chr4 (84-140)||(19308877-19308933)
chr4 (84-140)||(47419598-47419654)
chr4 (84-140)||(55724997-55725053)
chr4 (74-140)||(20675829-20675895)
chr4 (84-140)||(19756061-19756117)
chr4 (84-140)||(19783689-19783745)
chr4 (84-140)||(19837929-19837985)
chr4 (74-138)||(23872757-23872821)
chr4 (74-114)||(29133683-29133723)
chr4 (84-140)||(43516038-43516094)
chr4 (74-138)||(55299417-55299481)
[»] chr6 (31 HSPs)
chr6 (68-141)||(13563204-13563277)
chr6 (37-139)||(32186478-32186580)
chr6 (37-140)||(21549641-21549744)
chr6 (74-140)||(502812-502878)
chr6 (74-138)||(649353-649417)
chr6 (74-138)||(17078347-17078411)
chr6 (87-140)||(13938512-13938565)
chr6 (84-140)||(25351017-25351073)
chr6 (62-140)||(26206127-26206205)
chr6 (74-140)||(33640711-33640777)
chr6 (59-136)||(24766679-24766756)
chr6 (84-140)||(2554399-2554455)
chr6 (92-140)||(11469367-11469415)
chr6 (84-140)||(14686298-14686354)
chr6 (84-140)||(14843427-14843483)
chr6 (84-140)||(16468157-16468213)
chr6 (84-140)||(18681864-18681920)
chr6 (84-140)||(21629412-21629468)
chr6 (84-140)||(26514519-26514575)
chr6 (44-140)||(34275557-34275653)
chr6 (77-140)||(1104230-1104293)
chr6 (84-138)||(11060152-11060206)
chr6 (78-140)||(12673403-12673465)
chr6 (74-140)||(15674626-15674692)
chr6 (95-140)||(17577018-17577063)
chr6 (75-140)||(19616160-19616225)
chr6 (84-140)||(1307957-1308013)
chr6 (84-140)||(5866154-5866210)
chr6 (92-140)||(13086337-13086385)
chr6 (104-140)||(14372301-14372337)
chr6 (84-140)||(17605624-17605680)
[»] chr5 (29 HSPs)
chr5 (44-140)||(588301-588397)
chr5 (41-140)||(29572117-29572216)
chr5 (41-140)||(29573494-29573593)
chr5 (41-140)||(29574871-29574970)
chr5 (41-140)||(29576248-29576347)
chr5 (41-140)||(29577625-29577724)
chr5 (41-140)||(29579002-29579101)
chr5 (37-140)||(38358261-38358364)
chr5 (68-136)||(20207994-20208062)
chr5 (68-142)||(26261592-26261666)
chr5 (84-140)||(22094539-22094595)
chr5 (77-140)||(35121971-35122034)
chr5 (59-140)||(23239177-23239258)
chr5 (59-140)||(30731579-30731660)
chr5 (84-140)||(27796278-27796334)
chr5 (84-140)||(28534966-28535022)
chr5 (84-140)||(33170452-33170508)
chr5 (84-140)||(42514514-42514570)
chr5 (85-140)||(19506792-19506847)
chr5 (84-139)||(42260077-42260132)
chr5 (77-138)||(30509306-30509367)
chr5 (77-138)||(30549649-30549710)
chr5 (84-140)||(8299472-8299528)
chr5 (92-140)||(15861983-15862031)
chr5 (85-140)||(10780995-10781050)
chr5 (74-136)||(6050038-6050100)
chr5 (95-140)||(22174295-22174340)
chr5 (92-132)||(6885715-6885755)
chr5 (84-140)||(35983081-35983137)
[»] chr7 (23 HSPs)
chr7 (77-140)||(18768202-18768265)
chr7 (74-140)||(45993370-45993436)
chr7 (51-140)||(28173240-28173329)
chr7 (59-140)||(29968768-29968849)
chr7 (62-140)||(18671965-18672043)
chr7 (68-142)||(33820833-33820907)
chr7 (59-140)||(11276513-11276594)
chr7 (84-140)||(4937418-4937474)
chr7 (84-140)||(17721429-17721485)
chr7 (84-140)||(19735312-19735368)
chr7 (74-138)||(34232497-34232561)
chr7 (84-140)||(36227441-36227497)
chr7 (72-115)||(19544682-19544725)
chr7 (77-140)||(41340343-41340406)
chr7 (85-135)||(39930887-39930937)
chr7 (95-140)||(31423388-31423433)
chr7 (84-140)||(4164833-4164889)
chr7 (84-140)||(23054260-23054316)
chr7 (84-140)||(34207124-34207180)
chr7 (84-140)||(46626616-46626672)
chr7 (85-140)||(2820012-2820067)
chr7 (75-132)||(4078079-4078136)
chr7 (74-138)||(13440854-13440918)
[»] chr2 (20 HSPs)
chr2 (59-140)||(28399815-28399896)
chr2 (81-140)||(8065548-8065607)
chr2 (62-140)||(12646344-12646422)
chr2 (74-140)||(22724719-22724785)
chr2 (84-140)||(3153109-3153165)
chr2 (84-140)||(15018471-15018527)
chr2 (44-140)||(35488632-35488728)
chr2 (84-135)||(33583718-33583769)
chr2 (62-140)||(13551376-13551454)
chr2 (78-140)||(44028497-44028559)
chr2 (95-140)||(25380695-25380740)
chr2 (84-140)||(45422314-45422370)
chr2 (81-140)||(9668293-9668352)
chr2 (84-142)||(34357600-34357658)
chr2 (92-138)||(43722324-43722370)
chr2 (84-129)||(18669507-18669552)
chr2 (84-140)||(10289356-10289412)
chr2 (92-140)||(11197146-11197194)
chr2 (92-140)||(11233787-11233835)
chr2 (84-136)||(33515483-33515535)
[»] chr8 (34 HSPs)
chr8 (75-142)||(12341359-12341426)
chr8 (74-140)||(36157948-36158014)
chr8 (75-140)||(29721192-29721257)
chr8 (84-140)||(23942881-23942937)
chr8 (74-140)||(4987345-4987411)
chr8 (68-138)||(17659637-17659707)
chr8 (74-136)||(45255120-45255182)
chr8 (84-140)||(7453146-7453202)
chr8 (84-140)||(7925180-7925236)
chr8 (84-140)||(11393621-11393677)
chr8 (84-140)||(13878777-13878833)
chr8 (79-143)||(18187936-18188000)
chr8 (84-140)||(24794514-24794570)
chr8 (92-136)||(36025319-36025363)
chr8 (84-140)||(41664658-41664714)
chr8 (85-142)||(6245876-6245933)
chr8 (59-140)||(8300597-8300678)
chr8 (95-140)||(9923395-9923440)
chr8 (59-136)||(10530458-10530535)
chr8 (43-140)||(17858004-17858101)
chr8 (87-140)||(26774540-26774593)
chr8 (84-129)||(33070101-33070146)
chr8 (85-145)||(6901726-6901786)
chr8 (84-140)||(25193882-25193938)
chr8 (77-129)||(28453753-28453805)
chr8 (104-140)||(37165431-37165467)
chr8 (68-135)||(14345194-14345261)
chr8 (85-140)||(43612476-43612531)
chr8 (74-140)||(15539851-15539917)
chr8 (85-135)||(28992510-28992560)
chr8 (99-140)||(20825093-20825134)
chr8 (84-140)||(17700274-17700330)
chr8 (84-140)||(32267348-32267404)
chr8 (84-140)||(41691050-41691106)
[»] scaffold1350 (1 HSPs)
scaffold1350 (62-140)||(338-416)
[»] chr1 (21 HSPs)
chr1 (74-140)||(25504272-25504338)
chr1 (68-136)||(26721431-26721499)
chr1 (84-140)||(49264255-49264311)
chr1 (74-140)||(7396000-7396066)
chr1 (74-143)||(17708849-17708918)
chr1 (59-140)||(35541828-35541909)
chr1 (84-140)||(6051397-6051453)
chr1 (84-140)||(20796454-20796510)
chr1 (84-140)||(48434944-48435000)
chr1 (85-140)||(19014274-19014329)
chr1 (85-140)||(28358685-28358740)
chr1 (84-140)||(3544391-3544447)
chr1 (84-128)||(5809387-5809431)
chr1 (74-138)||(10710484-10710547)
chr1 (84-140)||(20987949-20988005)
chr1 (84-140)||(39431080-39431136)
chr1 (84-140)||(47622367-47622423)
chr1 (62-140)||(5497880-5497958)
chr1 (92-140)||(13867138-13867186)
chr1 (74-138)||(32352592-32352656)
chr1 (74-138)||(48072706-48072770)
[»] scaffold0472 (1 HSPs)
scaffold0472 (59-140)||(4046-4127)
[»] scaffold0179 (2 HSPs)
scaffold0179 (68-136)||(8330-8398)
scaffold0179 (68-136)||(13264-13332)
[»] scaffold0034 (1 HSPs)
scaffold0034 (84-140)||(105133-105189)
[»] scaffold0007 (1 HSPs)
scaffold0007 (74-136)||(182913-182975)
[»] scaffold0418 (1 HSPs)
scaffold0418 (84-140)||(8398-8454)
[»] scaffold0112 (1 HSPs)
scaffold0112 (84-140)||(14951-15007)
[»] scaffold0131 (1 HSPs)
scaffold0131 (60-138)||(3814-3892)
[»] scaffold0048 (1 HSPs)
scaffold0048 (92-140)||(63598-63646)
[»] scaffold0026 (1 HSPs)
scaffold0026 (96-140)||(67874-67918)


Alignment Details
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 35537536 - 35537476
Alignment:
Q  168 ggggagtgaggatctcaggaaaataccttgaatcggttggaacactgtttgctttcgaaag 228  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35537536 ggggagtgaggatctcaggaaaataccttgaattggttggaacactgtttgctttcgaaag 35537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 46907950 - 46908016
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||| || |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  46907950 acctctctgcctatctatgctctttccttcttcaaagctccatcaagtataatctcttccattgaat 46908016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 23819431 - 23819359
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| ||||||||| |||| || || ||||| |||||||||||||| |||||||||||||||||||||||||    
T  23819431 gtcctgacctctctgcctgtatatgcgctttccttcttcaaagctccatcaagtataatctcttccattgaat 23819359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 43120940 - 43121020
Alignment:
Q  60 taaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| ||||| ||||||||||||||||| ||  |||| |||||||||||||| | | |||||||||||||||||||||    
T  43120940 taaaatctgtcctgacctctctgtctgtctatgcgttttccttcttcaaagctccattaggtataatctcttccattgaat 43121020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 15481049 - 15481104
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  15481049 tgtctatgctctttctttcttcaaagctccatcaggtataatctcttccattgaat 15481104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 24925968 - 24926031
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| ||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||    
T  24925968 tctctgcctgtctatgcactttctttcttcaaagctccatcaggtataatctcttccattgaat 24926031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 42674681 - 42674784
Alignment:
Q  37 ttttgggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    |||||| ||||||||||  || || ||||| || || || |||||| ||||||| |||||||||||||||||||||||  || || ||||||||||||||    
T  42674681 ttttggtggccgcttgattctcctcaaatcagttctgacatctctgcctgtctatgctctttctttcttcaaagctccaacaggtgtaatctcttccatt 42674780  T
Q  137 gaat 140  Q
    ||||    
T  42674781 gaat 42674784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 36709781 - 36709703
Alignment:
Q  62 aaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| || ||||| |||||| ||||| | |||||||||||||||||||||||  || |||||||||||||||||||||    
T  36709781 aaatcagttctaacatctctgcctgtcgatgctctttctttcttcaaagctccaacaggtataatctcttccattgaat 36709703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 962453 - 962509
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  962453 ctgtctatgctctttcctttttcaaagctccgtcaggtataatctcttccattgaat 962509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 19919502 - 19919575
Alignment:
Q  67 cgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||  ||||  ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  19919502 cgtcctaactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 19919575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 36731740 - 36731687
Alignment:
Q  87 tctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  36731740 tctatgctctttcctttttcaaagctccgtcaggtataatctcttccattgaat 36731687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 2365128 - 2365072
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  2365128 ctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 2365072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 35537595 - 35537559
Alignment:
Q  36 attttgggggccgcttgacactgctaaaatccgtcct 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  35537595 attttgggggccgcttgacactgctaaaatccgtcct 35537559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 11584927 - 11584872
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||||||||| |||||||||||  || |||||||||| ||||||||||    
T  11584927 tgtctacgctctttcttttttcaaagctcccgcaggtataatctcctccattgaat 11584872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 53942095 - 53942040
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||  ||||||||    
T  53942095 tgtctatgctctttccttcttcaaagctccgtcaggtataatctctatcattgaat 53942040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 55367458 - 55367403
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||||||||| || ||||||||| ||||| |||||||||||||||| ||||    
T  55367458 tgtctacgctctttcctttttcaaagctgcgtcaggtataatctcttccatagaat 55367403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 6825662 - 6825608
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||| |||||||| |||||||| ||||||||||||||||| |||||| ||||    
T  6825662 ctgtctatgctctttccttcttcaaggctccgtcaagtataatttcttcccttga 6825608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 14863746 - 14863802
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||| |||||||| | | |||||||||||||||||||||    
T  14863746 ctgtctatgctctttccttctttaaagctccattaggtataatctcttccattgaat 14863802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 16179790 - 16179734
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || |||||||||| |||| |||||||||||||||||||||    
T  16179790 ctgtctatgcactttcctttttcaaagctctgtcaggtataatctcttccattgaat 16179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 21739778 - 21739834
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||| |||||||| |||  ||||||||||||||||||||    
T  21739778 ctgtctatgctctttccttctttaaagctccatcagttataatctcttccattgaat 21739834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 30166613 - 30166669
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  30166613 ctgtctatgccctttctttcttcaaagctccatcaggtataatttcttcccttgaat 30166669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 31675781 - 31675725
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| |||||||||||||||||| |||||||||||  ||||||||    
T  31675781 ctgtctatgccctttccttcttcaaagctccgtcaggtataatctctgtcattgaat 31675725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 31920642 - 31920698
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| |||||||||||| |||||||||||||||||  ||||||||    
T  31920642 ctgtctatgccctttccttcttcaaagcttcgtcaagtataatctctgtcattgaat 31920698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 34332105 - 34332161
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || || |||||||||||| |||||||||||||||||||||    
T  34332105 ctgtctatgcactttccttttttaaagctccgtcaggtataatctcttccattgaat 34332161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 40513014 - 40513070
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||| ||||||||| |||||||||||  ||||||||    
T  40513014 ctgtctatgctctttccttcttcaaggctccgtcaggtataatctctatcattgaat 40513070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 48569313 - 48569369
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||| ||| |||||||||||||||||||||    
T  48569313 ctgtctatgcactttcctttttcaaagctccatcaggtataatctcttccattgaat 48569369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 17077588 - 17077643
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| || ||||| || |||||||||| |||| |||||||||||||||||||||    
T  17077588 tgtctatgcactttcctttttcaaagctctgtcaggtataatctcttccattgaat 17077643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 25388163 - 25388214
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    |||||| ||||||||||||||||||||||  | | |||||||||||||||||    
T  25388163 tgtctatgctctttctttcttcaaagctcttttaggtataatctcttccatt 25388214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 19891516 - 19891471
Alignment:
Q  95 ctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| || ||||||||||||||| ||||||| |||||||||||||    
T  19891516 ctttcctttttcaaagctccgtcaggtataatatcttccattgaat 19891471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 52907343 - 52907388
Alignment:
Q  95 ctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||||||||| ||| ||||||||||||| |||||||    
T  52907343 ctttccttcttcaaagctccatcaggtataatctcttctattgaat 52907388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 10868486 - 10868438
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| ||||| |||||||  ||| |||||||||||||||||||||    
T  10868486 gctctttccttctttaaagctctatcaggtataatctcttccattgaat 10868438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 17271016 - 17271088
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| ||||||||   ||||||||||||||  || ||||||| || |||| ||||||||| |||||||||||    
T  17271016 gtcctgacctctcttcatgtctacgctcttttctttttcaaagttctgtcaggtataatctgttccattgaat 17271088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 18381898 - 18381842
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| ||| |||| || ||||||||||| ||| ||||||| |||||||||||||    
T  18381898 ctgtctatgctatttcctttttcaaagctccatcaggtataatatcttccattgaat 18381842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 34830242 - 34830186
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||||   ||||||||| ||||||||||| |||||||||    
T  34830242 ctgtctatgctctttccttcttcctggctccgtcaggtataatctctgccattgaat 34830186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 50545081 - 50545037
Alignment:
Q  96 tttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||| |||||||||| ||| ||| |||||||||||||||||||||    
T  50545081 tttccttcttcaaaggtccatcaggtataatctcttccattgaat 50545037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 8935934 - 8935865
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaatttt 143  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  8935934 acctctctgtctgtctatgctctttccttcttcaaagctccgtcaggtataatctctgccattgaatttt 8935865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 29553084 - 29553147
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||    
T  29553084 tctctgcctgtctatgctctttccttcttcaaagctccgtcaggtataatctcttccattgaat 29553147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 42779110 - 42779046
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||||||||||||| || ||||| |||||||||||||| ||| |||||||||||||||||||    
T  42779110 acctctctgtctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttccattga 42779046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 19115293 - 19115230
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||||| || ||||| |||||||||||||||||| ||||||||||| |||||||||    
T  19115293 tctctgtctgtctatgcactttccttcttcaaagctccgtcaggtataatctctaccattgaat 19115230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 26694825 - 26694722
Alignment:
Q  37 ttttgggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    |||||| ||||||||||  || || ||||| || || || |||||| ||||||| || ||||||||||||||||||||  || |||||||||||||||||    
T  26694825 ttttggtggccgcttgattctcctcaaatcagttctgacatctctgcctgtctatgccctttctttcttcaaagctccaacaggtataatctcttccatt 26694726  T
Q  137 gaat 140  Q
    ||||    
T  26694725 gaat 26694722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 2072400 - 2072336
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    |||||||||  |||||| |||||||||||||||||||||||||||  ||||||||||| ||||||    
T  2072400 acctctctgcatgtctatgctctttctttcttcaaagctccgtcagatataatctctttcattga 2072336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 19733278 - 19733334
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  19733278 ctgtctatgctctttcctttttcaaagctccgtcaggtataatctcttccattgaat 19733334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 34976807 - 34976735
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| ||||||||| |||| || || ||||| |||||||||||||| ||| |||||||||||||||||||||    
T  34976807 gtcctgacctctctgcctgtttatgcgctttccttcttcaaagctccatcaggtataatctcttccattgaat 34976735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 10562604 - 10562663
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttcc 133  Q
    ||||||||||||||||| || ||||| |||||||||||||| ||| ||||||||||||||    
T  10562604 acctctctgtctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttcc 10562663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 19648555 - 19648489
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||| ||||||| ||| || ||||||    
T  19648555 acctctctacctgtctatgctctttctttcttcaaagctccgtcaggtataatttctacccttgaat 19648489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 1827805 - 1827886
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||| ||  ||||  ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  1827805 ctaaagtccgtcctgactgctcttcctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 1827886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 23641881 - 23641937
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  23641881 ctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 23641937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 23647539 - 23647595
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  23647539 ctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 23647595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 42952821 - 42952877
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||    
T  42952821 ctgtctatgctctttccttctttaaagctccatcaggtataatctcttccattgaat 42952877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 48312944 - 48312888
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  48312944 ctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 48312888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 54482450 - 54482506
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  54482450 ctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 54482506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 20396434 - 20396380
Alignment:
Q  82 gtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||||||| || ||||| |||||||||||||| ||| |||||||||||||||||    
T  20396434 gtctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttccatt 20396380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 38296565 - 38296499
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||  ||||||| |||||||| |||||||| ||||||||| ||||||| | |||||||||||    
T  38296565 acctctctacctgtctatgctctttccttcttcaaggctccgtcaggtataattttttccattgaat 38296499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 53486231 - 53486273
Alignment:
Q  96 tttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  53486231 tttccttcttcaaagctccatcaagtataatctcttccattga 53486273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 15741059 - 15741014
Alignment:
Q  95 ctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||    
T  15741059 ctttcctttttcaaagctccgtcaggtataatctcttccattgaat 15741014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 7662598 - 7662654
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  7662598 ctgtctatgccctttctttcttcaaagctccatcaggtataatttcttcccttgaat 7662654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 14538336 - 14538276
Alignment:
Q  80 ctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||||| |||||||| |||| ||||||  || ||||||||| |||||||||||    
T  14538336 ctgtctgtctacgccctttcttttttcagagctcccgcaggtataatctattccattgaat 14538276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 19308877 - 19308933
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| |||||||| |||| ||||||  || |||||||||||||||||||||    
T  19308877 ctgtctacgccctttcttttttcagagctcccgcaggtataatctcttccattgaat 19308933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 47419654 - 47419598
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || || || ||||||||||||||| || |||||||||||||||||||||    
T  47419654 ctgtctatgcactctccttcttcaaagctccgacaggtataatctcttccattgaat 47419598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 55724997 - 55725053
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| | |||||| || ||||||||||||||  |||||||||||||||||||||    
T  55724997 ctgtctatgttctttcctttttcaaagctccgtcgggtataatctcttccattgaat 55725053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 20675895 - 20675829
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||| ||||||| || ||||| ||||||||||||||  || |||||||||| || |||||||    
T  20675895 acctctctgcctgtctatgcactttcattcttcaaagctccagcaggtataatctcctctattgaat 20675829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 19756117 - 19756061
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || |||||| ||| |||| |||||||||||||||||||||    
T  19756117 ctgtctatgcactttcctttttcaaaactctgtcaggtataatctcttccattgaat 19756061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 19783689 - 19783745
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || |||||| ||| |||| |||||||||||||||||||||    
T  19783689 ctgtctatgcactttcctttttcaaaactctgtcaggtataatctcttccattgaat 19783745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 19837985 - 19837929
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| |||||||| |||| ||||||  || ||||||||||| |||||||||    
T  19837985 ctgtctacgccctttcttttttcagagctcccgcaggtataatctctaccattgaat 19837929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 23872757 - 23872821
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||||| ||||||| || ||||| ||||||||||||||  || |||||||||| || |||||    
T  23872757 acctctctgcctgtctatgcactttccttcttcaaagctccagcaggtataatctcctctattga 23872821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 29133723 - 29133683
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctcc 114  Q
    |||||||| |||||||| |||||||| ||||||||||||||    
T  29133723 acctctctctctgtctatgctctttccttcttcaaagctcc 29133683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 43516038 - 43516094
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||| ||||| ||| |||||||||||  ||||||||    
T  43516038 ctgtctatgctctttccttcttcaaggctccatcaggtataatctctgtcattgaat 43516094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 55299481 - 55299417
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||||| ||||||| || ||||| ||||||||||||||  || |||||||||| || |||||    
T  55299481 acctctctgcctgtctatgcactttccttcttcaaagctccaacaggtataatctcctctattga 55299417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 13563204 - 13563277
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaatt 141  Q
    ||||||||||||||| ||||||| |||||||| || ||||||||||||||| ||||||||| ||||||||||||    
T  13563204 gtcctaacctctctgcctgtctatgctctttcctttttcaaagctccgtcaggtataatcttttccattgaatt 13563277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 32186580 - 32186478
Alignment:
Q  37 ttttgggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    |||||||||||||||||  || || || || ||||| ||||| ||  |||||||| ||||||||||||||||||||||| ||  ||||||||||||||||    
T  32186580 ttttgggggccgcttgattcttcttaagtctgtcctgacctcgcttcctgtctacactctttctttcttcaaagctccgacagatataatctcttccatt 32186481  T
Q  137 gaa 139  Q
    |||    
T  32186480 gaa 32186478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 21549744 - 21549641
Alignment:
Q  37 ttttgggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    |||||| ||||||||||  || || ||||| || || || ||||||  |||||| |||||||||||||||||||||||  || |||||||||||||||||    
T  21549744 ttttggtggccgcttgattctcctcaaatcagttctgacatctctgcttgtctatgctctttctttcttcaaagctccaacaggtataatctcttccatt 21549645  T
Q  137 gaat 140  Q
    ||||    
T  21549644 gaat 21549641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 502812 - 502878
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  502812 acctctatgcctgtctatgctctttctttcttcaaagctccgtcaggtataatctctacccttgaat 502878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 649353 - 649417
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||||| ||||||| || ||||| |||||||||||||| ||| |||||||||||||||||||    
T  649353 acctctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttccattga 649417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 17078347 - 17078411
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    |||||||||||||| || || ||||| |||||||||||||| ||| |||||||||||||||||||    
T  17078347 acctctctgtctgtttatgcgctttccttcttcaaagctccatcaggtataatctcttccattga 17078411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 13938565 - 13938512
Alignment:
Q  87 tctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  13938565 tctatgctctttcctttttcaaagctccgtcaggtataatctcttccattgaat 13938512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 25351073 - 25351017
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||||||||||||| |||||||||||  ||||||||    
T  25351073 ctgtctatgctctttccttcttcaaagctccgtcaggtataatctctatcattgaat 25351017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 26206205 - 26206127
Alignment:
Q  62 aaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| ||||| |||||| || ||||||| || ||||| |||||||||||||| ||| |||||||||| || |||||||    
T  26206205 aaatctgtcctgacctctttgcctgtctatgcactttccttcttcaaagctccatcaggtataatctcctctattgaat 26206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 33640777 - 33640711
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||  ||||||| ||| || ||||||    
T  33640777 acctctctgcctgtctatgctctttctttcttcaaagctctgtcgggtataatttctacccttgaat 33640711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 24766679 - 24766756
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||| |||||||| ||  ||||  ||||||| || ||||| || ||||||||||||||| |||||||||||||||||    
T  24766679 ctaaagtccgtcctgactgctctacctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccatt 24766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 2554455 - 2554399
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||  |||||||||||||||||||||    
T  2554455 ctgtctatgcactttcctttttcaaagctccgtcgggtataatctcttccattgaat 2554399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 11469415 - 11469367
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||||||||||| ||| || ||||||||||||||||||    
T  11469415 gctctttccttcttcaaagctccatcaggtttaatctcttccattgaat 11469367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 14686298 - 14686354
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||| ||||||||| |||||||||||  ||||||||    
T  14686298 ctgtctatgctctttccttcttcaaggctccgtcaggtataatctctatcattgaat 14686354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 14843427 - 14843483
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| |||||||||||||||||| |||||||||||  ||||||||    
T  14843427 ctgtctatgccctttccttcttcaaagctccgtcaggtataatctctgtcattgaat 14843483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 16468213 - 16468157
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| |||||||  |||| ||||||  ||||||||||||||||||||||||    
T  16468213 ctgtctacgccctttcttatttcagagctcccgcaagtataatctcttccattgaat 16468157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 18681864 - 18681920
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||||||| || ||||||||||| ||  ||||||||||| |||||||||    
T  18681864 ctgtctacgctctttcctttttcaaagctccatcgggtataatctctcccattgaat 18681920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 21629412 - 21629468
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||| ||||||||||||| |||||||    
T  21629412 ctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttctattgaat 21629468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 26514575 - 26514519
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||||||||||||||||| |||| ||||| |||||  ||||||||    
T  26514575 ctgtctatgctctttctttcttcaaagctctgtcaggtatactctctatcattgaat 26514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 34275557 - 34275653
Alignment:
Q  44 ggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||  |||| |||| |||||| ||||| ||||||||||  ||| ||||||| |||||| ||   ||| |||||| ||||||||||||||    
T  34275557 ggccgcttgactttgcttaaattcgtcctgacctccctgtctgtctgtgctatttctttattcaaaactttatcaggtataaactcttccattgaat 34275653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 1104230 - 1104293
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||||| |||||||| |||||||||||||| | | ||| ||||||||  |||||||    
T  1104230 tctctgtctgtctatgctctttccttcttcaaagctccattaggtacaatctcttatattgaat 1104293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 11060152 - 11060206
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||| || ||||| |||||||||| ||| ||| |||||||||||||||||||    
T  11060152 ctgtctatgcgctttccttcttcaaagttccatcaggtataatctcttccattga 11060206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 12673403 - 12673465
Alignment:
Q  78 ctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| ||||||| |||||||| |||||||| | ||| || ||||||||||||||||| ||||    
T  12673403 ctctgcctgtctatgctctttccttcttcaacgatccatctagtataatctcttccatagaat 12673465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 15674692 - 15674626
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||| ||||||| || ||||| ||||||||||||||  || |||||||||| || |||||||    
T  15674692 acctctctgcctgtctatgcactttccttcttcaaagctccagcaggtataatctcctctattgaat 15674626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 17577018 - 17577063
Alignment:
Q  95 ctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| || ||||||||||||||| ||||||||||||| |||||||    
T  17577018 ctttcctttttcaaagctccgtcaggtataatctcttctattgaat 17577063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 19616160 - 19616225
Alignment:
Q  75 cctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| ||||||| || |||||||| || | ||||||  || |||||||||||||||||||||    
T  19616160 cctctctgcctgtctatgccctttctttttttagagctcctgcaggtataatctcttccattgaat 19616225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 1307957 - 1308013
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||  |||||||| |||| ||||||  || |||||||||||||||||||||    
T  1307957 ctgtctacgtcctttcttttttcagagctccagcaggtataatctcttccattgaat 1308013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 5866154 - 5866210
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| |||||||| |||| ||||||   ||||||||||||| |||||||||    
T  5866154 ctgtctacgccctttcttttttcagagctcccgtaagtataatctctaccattgaat 5866210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 13086385 - 13086337
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| ||||| |||||||| ||| |||||||||||| ||||||||    
T  13086385 gctctttccttctttaaagctccatcaggtataatctctttcattgaat 13086337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 14372301 - 14372337
Alignment:
Q  104 ttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||| || |||||||||||||||||||||    
T  14372301 ttcaaagctccgccaggtataatctcttccattgaat 14372337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 17605624 - 17605680
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||| ||| ||||||||||||| |||||||    
T  17605624 ctgtctatgcgctttcctttttcaaagctccatcaggtataatctcttctattgaat 17605680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 588397 - 588301
Alignment:
Q  44 ggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||  ||| |||||||| ||| | ||||||||| ||||||| ||||||| ||||||||||||||| | | |||||||||||||||||||||    
T  588397 ggccgcttggtacttctaaaatctgtcttgacctctctgcctgtctatgctctttgtttcttcaaagctccattatgtataatctcttccattgaat 588301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 29572117 - 29572216
Alignment:
Q  41 gggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||  |||| ||||| || || ||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  29572117 gggggccgtttgactttgcttaaatctgttctgacctctctgcctgtctatgcactttccttcttcaaagctctgtcaagtataatctcttcctttgaat 29572216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 29573494 - 29573593
Alignment:
Q  41 gggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||  |||| ||||| || || ||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  29573494 gggggccgtttgactttgcttaaatctgttctgacctctctgcctgtctatgcactttccttcttcaaagctctgtcaagtataatctcttcctttgaat 29573593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 29574871 - 29574970
Alignment:
Q  41 gggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||  |||| ||||| || || ||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  29574871 gggggccgtttgactttgcttaaatctgttctgacctctctgcctgtctatgcactttccttcttcaaagctctgtcaagtataatctcttcctttgaat 29574970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 29576248 - 29576347
Alignment:
Q  41 gggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||  |||| ||||| || || ||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  29576248 gggggccgtttgactttgcttaaatctgttctgacctctctgcctgtctatgcactttccttcttcaaagctctgtcaagtataatctcttcctttgaat 29576347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 29577625 - 29577724
Alignment:
Q  41 gggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||  |||| ||||| || || ||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  29577625 gggggccgtttgactttgcttaaatctgttctgacctctctgcctgtctatgcactttccttcttcaaagctctgtcaagtataatctcttcctttgaat 29577724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 29579002 - 29579101
Alignment:
Q  41 gggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||  |||| ||||| || || ||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  29579002 gggggccgtttgactttgcttaaatctgttctgacctctctgcctgtctatgcactttccttcttcaaagctctgtcaagtataatctcttcctttgaat 29579101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 38358364 - 38358261
Alignment:
Q  37 ttttgggggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    |||||| || || ||||| || |||||||| || || || |||||| ||||||| |||||||||||||||||||||||  || |||||||||||||||||    
T  38358364 ttttggtggtcgtttgactctcctaaaatcagttctgacatctctgcctgtctatgctctttctttcttcaaagctccaacaggtataatctcttccatt 38358265  T
Q  137 gaat 140  Q
    ||||    
T  38358264 gaat 38358261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 20207994 - 20208062
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||||||||||||| ||||||| || ||||| |||||||||||||| ||| |||||||||||||||||    
T  20207994 gtcctaacctctctgcctgtctatgcgctttccttcttcaaagctccatcatgtataatctcttccatt 20208062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 26261592 - 26261666
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaattt 142  Q
    ||||| || ||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||| |||||||||    
T  26261592 gtcctgacttctctatctgtctatgctctttccttcttcaaagctccttcaggtataatctcttctattgaattt 26261666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 22094539 - 22094595
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||    
T  22094539 ctgtctatgctctttccttcttcaaagctccgtcaggtataatctctgccattgaat 22094595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 35121971 - 35122034
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| ||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||    
T  35121971 tctctgcctgtctatgctctttccttctttaaagctccttcaggtataatctcttccattgaat 35122034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 23239258 - 23239177
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||| ||  ||||  ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  23239258 ctaaagtccgtcctgactgctctacctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 23239177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 30731579 - 30731660
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||| ||  ||||  ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  30731579 ctaaagtccgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 30731660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 27796334 - 27796278
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  27796334 ctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 27796278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 28534966 - 28535022
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  28534966 ctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 28535022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 33170508 - 33170452
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| || ||||||||||||||| ||||||||| |||||||||||    
T  33170508 ctgtctatgctctttcctttttcaaagctccgtcaggtataatctattccattgaat 33170452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 42514570 - 42514514
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  42514570 ctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 42514514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 19506847 - 19506792
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||    
T  19506847 tgtctatgctctttccttctttaaagctccatcaggtataatctcttccattgaat 19506792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 42260132 - 42260077
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaa 139  Q
    |||||||||||||||| |||||||||||||| |||  |||||||| ||||||||||    
T  42260132 ctgtctacgctctttccttcttcaaagctccatcagatataatcttttccattgaa 42260077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 30509306 - 30509367
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    |||||| ||||||| |||||||| ||||| ||||||||  || |||||||||||||||||||    
T  30509306 tctctgcctgtctatgctctttccttctttaaagctccaacaggtataatctcttccattga 30509367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 30549649 - 30549710
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    |||||| ||||||| |||||||| ||||| ||||||||  || |||||||||||||||||||    
T  30549649 tctctgcctgtctatgctctttccttctttaaagctccaacaggtataatctcttccattga 30549710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 8299472 - 8299528
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||| ||||||||||||| |||||||    
T  8299472 ctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttctattgaat 8299528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 15861983 - 15862031
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||||||||||||| | ||||| |||| ||||||||||||||||    
T  15861983 gctctttctttcttcaaagattcgtcaggtattatctcttccattgaat 15862031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 10781050 - 10780995
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| || ||||| || ||||||||||||||| ||||||||||||| |||||||    
T  10781050 tgtctatgcactttcctttttcaaagctccgtcaggtataatctcttctattgaat 10780995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 6050100 - 6050038
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||| ||| ||||||| || ||||| |||||||||||||| ||| ||||||| |||||||||    
T  6050100 acctcgctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatatcttccatt 6050038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 22174295 - 22174340
Alignment:
Q  95 ctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||||| | ||| ||| |||||||||||||||||||||    
T  22174295 ctttctttcttcaaggttccatcaggtataatctcttccattgaat 22174340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 6885755 - 6885715
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttc 132  Q
    |||||||| |||||||||||||| ||| |||||||||||||    
T  6885755 gctctttccttcttcaaagctccatcaggtataatctcttc 6885715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 35983081 - 35983137
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || |||||||||| |||| ||||||||| |||||||||||    
T  35983081 ctgtctatgcactttcctttttcaaagctctgtcaggtataatcttttccattgaat 35983137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 18768265 - 18768202
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  18768265 tctctgcctgtctatgctctttctttcttcaaagctccaacaagtataatctcttccattgaat 18768202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 45993436 - 45993370
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  45993436 acctctctgcctgtctatgctctttctttcttcaaagctccgtcaggtataatctctacccttgaat 45993370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 28173240 - 28173329
Alignment:
Q  51 tgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||||| ||  | |||||  |||||||||| ||||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  28173240 tgacagtgctaaaatctgttttgacctcattgtctgtctatgctctttttttcttcaaagctccgtcagatattatctcttccattgaat 28173329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 29968849 - 29968768
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||| ||  ||||  ||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  29968849 ctaaagtccgtcctgactgctctacctgtctatgctctttcctttttcaaagctccgtcaggtataatctcttccattgaat 29968768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 18672043 - 18671965
Alignment:
Q  62 aaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| || ||||| |||||||||||||| | |||||| ||||||||||||   ||| |||||||||||||||||||||    
T  18672043 aaatcagttctaacttctctgtctgtctatgatctttccttcttcaaagctatatcaggtataatctcttccattgaat 18671965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 33820833 - 33820907
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaattt 142  Q
    ||||| ||||||||| || |||| | |||||| |||||||||||||| ||| |||| ||||||||||||||||||    
T  33820833 gtcctgacctctctgcctatctatgttctttccttcttcaaagctccatcaggtattatctcttccattgaattt 33820907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 11276513 - 11276594
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||| ||  ||||  ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  11276513 ctaaagtccgtcctgactgctctacctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 11276594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 4937418 - 4937474
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  4937418 ctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 4937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 17721485 - 17721429
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  17721485 ctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 17721429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 19735368 - 19735312
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||    
T  19735368 ctgtctatgctctttccttctttaaagctccatcaggtataatctcttccattgaat 19735312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 34232561 - 34232497
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    |||||||||  |||||| || ||||| |||||||||||||| ||| |||||||||||||||||||    
T  34232561 acctctctgcttgtctatgcgctttccttcttcaaagctccatcaggtataatctcttccattga 34232497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 36227441 - 36227497
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  36227441 ctgtctatgccctttctttcttcaaagctccatcaggtataatttcttccattgaat 36227497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 19544682 - 19544725
Alignment:
Q  72 taacctctctgtctgtctacgctctttctttcttcaaagctccg 115  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  19544682 taacctctctgtctgtctatgctctttccttcttcaaagctccg 19544725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 41340406 - 41340343
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||| || ||||| |||||||||||| ||| | |||||||||||||||||||||    
T  41340406 tctctgtatgtctatgccctttccttcttcaaagcttcgtaaggtataatctcttccattgaat 41340343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 39930887 - 39930937
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccat 135  Q
    |||||| |||||||| |||||||||||||| ||| ||||||||||||||||    
T  39930887 tgtctatgctctttccttcttcaaagctccatcatgtataatctcttccat 39930937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 31423433 - 31423388
Alignment:
Q  95 ctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||    
T  31423433 ctttcctttttcaaagctccgtcaggtataatctcttccattgaat 31423388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 4164889 - 4164833
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| |||||||| |||| ||||||  || |||||||||||||||||||||    
T  4164889 ctgtctacgccctttcttttttcagagctcccgcaggtataatctcttccattgaat 4164833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 23054260 - 23054316
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||| ||||||| |||| |||||||||||||||||||||    
T  23054260 ctgtctatgcactttccttctttaaagctctgtcaggtataatctcttccattgaat 23054316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 34207180 - 34207124
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| |||||||| |||| ||||||  || |||||||||||||||||||||    
T  34207180 ctgtctacgccctttcttttttcagagctcccgcaggtataatctcttccattgaat 34207124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 46626672 - 46626616
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || |||||||||||||||||||| |||  ||||||||||||| ||||||    
T  46626672 ctgtctatgccctttctttcttcaaagctccatcagatataatctcttcccttgaat 46626616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 2820012 - 2820067
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||||||| |||||||    
T  2820012 tgtctatgttctttccttcttcaaagccccgtcaggtataatctcttctattgaat 2820067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 4078136 - 4078079
Alignment:
Q  75 cctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttc 132  Q
    |||||||| ||||||| || ||||| ||||||| |||||| ||| |||||||||||||    
T  4078136 cctctctgcctgtctatgcgctttccttcttcagagctccatcaggtataatctcttc 4078079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 13440918 - 13440854
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||||| ||||||| || ||||| ||||||||||||||  || |||||||||| || |||||    
T  13440918 acctctctgcctgtctatgcgctttccttcttcaaagctccagcaggtataatctcctctattga 13440854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 28399815 - 28399896
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| || || || |||||| ||||||| |||||||||||||||||||||||  || |||||||||||||||||||||    
T  28399815 ctaaaatcagttctgacatctctgcctgtctatgctctttctttcttcaaagctccagcaggtataatctcttccattgaat 28399896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 8065548 - 8065607
Alignment:
Q  81 tgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| ||| |||| |||||||||||||| ||| |||||||||||||||||||||    
T  8065548 tgtctgtctatgctttttccttcttcaaagctccatcaggtataatctcttccattgaat 8065607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 12646422 - 12646344
Alignment:
Q  62 aaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||||||||  | ||  ||||||| |||||||| || |||||||||||| || |||||||||||||||||||||    
T  12646422 aaatccgtcctaactgcgcttcctgtctatgctctttcctttttcaaagctccgccaggtataatctcttccattgaat 12646344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 22724719 - 22724785
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||||||||||| |||||||| ||||| |||||| ||| | ||||||||||| |||||||||    
T  22724719 acctctctgtctgtctatgctctttccttctttaaagcttcgttaggtataatctctaccattgaat 22724785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 3153109 - 3153165
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| |||||||| |||||||||||  || |||||||||||||||||||||    
T  3153109 ctgtctacgccctttcttttttcaaagctcccgcaggtataatctcttccattgaat 3153165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 15018527 - 15018471
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| |||||||||||||||||| ||||||||||| |||||||||    
T  15018527 ctgtctatgcactttccttcttcaaagctccgtcaggtataatctctaccattgaat 15018471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 35488728 - 35488632
Alignment:
Q  44 ggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||||  || || ||||| || || |||||| || ||||||| ||| |||| ||||| |||||||| ||| |||||||||||||||||||||    
T  35488728 ggccgcttgatccttctcaaatcagttctgacctctttgcctgtctatgctttttccttctttaaagctccttcaggtataatctcttccattgaat 35488632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 33583718 - 33583769
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccat 135  Q
    ||||||| |||||||| || ||||||||||||||| ||||||||||||||||    
T  33583718 ctgtctatgctctttcctttttcaaagctccgtcaggtataatctcttccat 33583769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 13551454 - 13551376
Alignment:
Q  62 aaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| ||||| |||||| || ||||||| || ||||| |||||||||||||| ||| |||||||||| || |||||||    
T  13551454 aaatctgtcctgacctctttgcctgtctatgcactttccttcttcaaagctccatcaggtataatctcctctattgaat 13551376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 44028497 - 44028559
Alignment:
Q  78 ctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||| |||||||| |||||||| |||||||| ||||| ||| ||||||||||||| |||||||    
T  44028497 ctctatctgtctatgctctttccttcttcaaggctccatcatgtataatctcttctattgaat 44028559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 25380695 - 25380740
Alignment:
Q  95 ctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||||    
T  25380695 ctttctttcttcaaagctccatcaggtataatctcttctattgaat 25380740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 45422370 - 45422314
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  45422370 ctgtctatgccctttctttcttcaaagctccatcaggtataatttcttcccttgaat 45422314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 9668293 - 9668352
Alignment:
Q  81 tgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| ||||| || ||||| |||||||| |||  ||||||||||||||||||||    
T  9668293 tgtctgtctatgctctgtccttctttaaagctccatcagatataatctcttccattgaat 9668352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 34357658 - 34357600
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaattt 142  Q
    ||||||| |||||||| |||||||| ||||||| |  |||||| |||||||||||||||    
T  34357658 ctgtctatgctctttccttcttcaaggctccgttagatataatttcttccattgaattt 34357600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 43722324 - 43722370
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    |||||||| |||||||| ||||||||| ||||||| |||||||||||    
T  43722324 gctctttccttcttcaaggctccgtcaggtataatttcttccattga 43722370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 18669507 - 18669552
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctc 129  Q
    |||||||||| |||||||||||||||||||  ||| ||||||||||    
T  18669507 ctgtctacgccctttctttcttcaaagctctctcaggtataatctc 18669552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 10289356 - 10289412
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||||||||| |||||||| ||| | || |||||||    
T  10289356 ctgtctatgctctttccttcttcaaagctccctcaagtatcatcgcctctattgaat 10289412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 11197194 - 11197146
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||||| ||||||||| |||||||||||  ||||||||    
T  11197194 gctctttcattcttcaaggctccgtcaggtataatctctatcattgaat 11197146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 11233787 - 11233835
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| ||||| |||||||| ||| ||||| |||||||||||||||    
T  11233787 gctctttccttctttaaagctccatcaggtatagtctcttccattgaat 11233835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 33515483 - 33515535
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||||| || ||||| || ||||||||||||||| ||| |||||||||||||    
T  33515483 ctgtctatgcactttcctttttcaaagctccgtcaggtacaatctcttccatt 33515535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 12341426 - 12341359
Alignment:
Q  75 cctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaattt 142  Q
    |||||||| |||||||||||||||| || |||||||||| |||  |||||||||||||||||||||||    
T  12341426 cctctctgcctgtctacgctctttcctttttcaaagctctgtcgggtataatctcttccattgaattt 12341359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 36158014 - 36157948
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||| ||||||| || ||||| |||||||||||||| ||| |||||||||||||||||||||    
T  36158014 acctctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttccattgaat 36157948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 29721192 - 29721257
Alignment:
Q  75 cctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| || ||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  29721192 cctctttgcctgtctatgctctttcctttttcaaagctccgtcaggtataatctcttccattgaat 29721257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 23942937 - 23942881
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||    
T  23942937 ctgtctatgctctttccttcttcaaagctccatcatgtataatctcttccattgaat 23942881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 4987345 - 4987411
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||| ||||||| ||| || ||||||    
T  4987345 acctctctacctgtctatgctctttctttcttcaaagctccgtcaggtataatttctacccttgaat 4987411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 17659707 - 17659637
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||| |||||| || ||||||| || ||||| ||||| |||||||| |||||||||||||||||||||||    
T  17659707 gtcctgacctctttgcctgtctatgcgctttccttcttaaaagctccatcaagtataatctcttccattga 17659637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 45255120 - 45255182
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||| ||||||||||| || ||||| |||||||||||||| ||| |||||||||||||||||    
T  45255120 acctcgctgtctgtctatgcgctttcattcttcaaagctccatcaggtataatctcttccatt 45255182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 7453202 - 7453146
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || |||||||||||||||||||| ||| |||||||||||||| ||||||    
T  7453202 ctgtctatgcactttctttcttcaaagctccatcaggtataatctcttcccttgaat 7453146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 7925236 - 7925180
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  7925236 ctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 7925180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 11393621 - 11393677
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||    
T  11393621 ctgtctatgctctttcattctttaaagctccatcaggtataatctcttccattgaat 11393677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 13878777 - 13878833
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  13878777 ctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 13878833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 18188000 - 18187936
Alignment:
Q  79 tctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaatttt 143  Q
    |||||||||||| ||||||||  ||||||||||||||||| ||| ||||||||| ||| ||||||    
T  18188000 tctgtctgtctatgctctttccatcttcaaagctccgtcaggtacaatctcttctattaaatttt 18187936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 24794570 - 24794514
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||    
T  24794570 ctgtctatgctctttccttctttaaagctccatcaggtataatctcttccattgaat 24794514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 36025363 - 36025319
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    |||||||| |||||||||||||||||| |||||||||||||||||    
T  36025363 gctctttccttcttcaaagctccgtcaggtataatctcttccatt 36025319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 41664658 - 41664714
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||| ||||| || ||||||||||||||| ||||||||| |||||||||||    
T  41664658 ctgtctacgcactttcctttttcaaagctccgtcaggtataatctattccattgaat 41664714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 6245933 - 6245876
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaattt 142  Q
    |||||| |||||||| |||||||||||||||||| |||||||| ||  ||||||||||    
T  6245933 tgtctatgctctttccttcttcaaagctccgtcaggtataatccctgtcattgaattt 6245876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 8300678 - 8300597
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||| ||  ||||  ||||||| || ||||| || |||||||||||| || |||||||||||||||||||||    
T  8300678 ctaaagtccgtcctgactgctctacctgtctatgcactttcctttttcaaagctccggcaggtataatctcttccattgaat 8300597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 9923440 - 9923395
Alignment:
Q  95 ctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||    
T  9923440 ctttcctttttcaaagctccgtcaggtataatctcttccattgaat 9923395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 10530535 - 10530458
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||| |||||||||||  |||| ||||| || || ||||| || ||||||||||| ||| |||||||||||||||||    
T  10530535 ctaaagtccgtcctaactgctctttctgtttatgcactttcctttttcaaagctccttcaggtataatctcttccatt 10530458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 17858004 - 17858101
Alignment:
Q  43 gggccgcttgacactgctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||  || |||||||| |||||| | || |||  ||||||||||||||| || |||||||||||  || ||||| |||||||||| ||||    
T  17858004 gggccgcttgatccttctaaaatctgtcctatcttcactgcgtgtctacgctctttcctttttcaaagctcccgcatgtatactctcttccatcgaat 17858101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 26774540 - 26774593
Alignment:
Q  87 tctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||| ||||| || |||||||||||||||||| ||||||||||||| |||||||    
T  26774540 tctatgctctctccttcttcaaagctccgtcatgtataatctcttctattgaat 26774593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 33070146 - 33070101
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctc 129  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  33070146 ctgtctacgctatttctttcttcaaagctccctcaggtataatctc 33070101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 6901786 - 6901726
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaattttca 145  Q
    |||||| || ||||| |||||||||||||| | | ||||||||||||||||||||| ||||    
T  6901786 tgtctatgccctttccttcttcaaagctccattaggtataatctcttccattgaatcttca 6901726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 25193938 - 25193882
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||||||||||| |||| |||||||||||  ||||||||    
T  25193938 ctgtctatgctctttccttcttcaaagctctgtcaggtataatctctatcattgaat 25193882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 28453753 - 28453805
Alignment:
Q  77 tctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctc 129  Q
    |||||| |||||||||| |||||||| ||||||||||| ||| ||||||||||    
T  28453753 tctctgcctgtctacgccctttcttttttcaaagctccctcaggtataatctc 28453805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 37165431 - 37165467
Alignment:
Q  104 ttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37165431 ttcaaagctccgtcaggtataatctcttccattgaat 37165467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 14345194 - 14345261
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccat 135  Q
    ||||||||  ||||||||||||| |||||||| ||||||||  |||| |||  |||||||||||||||    
T  14345194 gtcctaactactctgtctgtctatgctctttccttcttcaagactccatcagatataatctcttccat 14345261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 43612476 - 43612531
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| || ||||| ||||| |||||||| ||| |||||||||||||||||||||    
T  43612476 tgtctatgccctttcattcttgaaagctccatcaggtataatctcttccattgaat 43612531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 15539917 - 15539851
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||| |||| || |||||||| |||||||||||||||||| |||| || |||  ||||||||    
T  15539917 acctctctgcctgtttatgctctttccttcttcaaagctccgtcaggtatcatttctatcattgaat 15539851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 28992510 - 28992560
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccat 135  Q
    |||||| |||||||| ||||||||||  |||||| ||||||||||||||||    
T  28992510 tgtctatgctctttccttcttcaaagtcccgtcaggtataatctcttccat 28992560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 20825134 - 20825093
Alignment:
Q  99 ctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||| ||||||||||||||| ||||||||||||| |||||||    
T  20825134 cttttttcaaagctccgtcaggtataatctcttctattgaat 20825093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 17700330 - 17700274
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || |||||||||||||||  |||||||||||| |||||||    
T  17700330 ctgtctatgcactttcctttttcaaagctccgtcagatataatctcttctattgaat 17700274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 32267404 - 32267348
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || |||||||||  |||| |||||||||||||||||||||    
T  32267404 ctgtctatgcactttcctttttcaaagctttgtcaggtataatctcttccattgaat 32267348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 41691050 - 41691106
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| | |||||||| |||| ||||||  || |||||||||||||||||||||    
T  41691050 ctgtctacaccctttcttttttcagagctcccgcaggtataatctcttccattgaat 41691106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 416 - 338
Alignment:
Q  62 aaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||||||||  | ||  ||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  416 aaatccgtcctaactgcgcttcctgtctatgctctttcctttttcaaagctccgtcaagtataatctcttcaattgaat 338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 25504272 - 25504338
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  25504272 acctctcttcctgtctatgctctttctttcttcaaagctccgtcaggtataatctctacccttgaat 25504338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 26721499 - 26721431
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||| ||||||||| ||||||| || ||||| |||||||||||||| ||| |||||||||||||||||    
T  26721499 gtcctgacctctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttccatt 26721431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 49264255 - 49264311
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  49264255 ctgtctatgctctttctttctttaaagctccatcaggtataatctcttccattgaat 49264311  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 7396000 - 7396066
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| |||||||||| | |||||| |||||||||||||| ||| |||||||||||||| ||||||    
T  7396000 acctctttgtctgtctatgatctttccttcttcaaagctccatcaggtataatctcttccgttgaat 7396066  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 17708918 - 17708849
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaatttt 143  Q
    ||||||||| ||||||| || ||||| |||||||||||||| ||| |||||||||||||| |||| ||||    
T  17708918 acctctctgcctgtctatgcactttccttcttcaaagctccatcaggtataatctcttccgttgactttt 17708849  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 35541909 - 35541828
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||| ||  ||||  ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  35541909 ctaaagtccgtcctgactgctctacctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 35541828  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 6051453 - 6051397
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  6051453 ctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 6051397  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 20796510 - 20796454
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||    
T  20796510 ctgtctatgctctttccttctttaaagctccatcaggtataatctcttccattgaat 20796454  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 48435000 - 48434944
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||||||||||| || |||||||||||  || |||||||||||||||||||||    
T  48435000 ctgtctacgctctttcctttttcaaagctcccgcaggtataatctcttccattgaat 48434944  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 19014274 - 19014329
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| |||||||| ||||||||||||| ||||  ||||||||||||||||||||    
T  19014274 tgtctatgctctttccttcttcaaagctctgtcagatataatctcttccattgaat 19014329  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 28358740 - 28358685
Alignment:
Q  85 tgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||  ||||||||    
T  28358740 tgtctatgctctttccttcttcaaagctccgtcaggtataatctctctcattgaat 28358685  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 3544391 - 3544447
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| |||||||||||||||||| |||||||||||  ||||||||    
T  3544391 ctgtctatgccctttccttcttcaaagctccgtcaggtataatctctgtcattgaat 3544447  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 5809431 - 5809387
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatct 128  Q
    ||||||| |||||||| |||||||||||||||||| |||||||||    
T  5809431 ctgtctatgctctttccttcttcaaagctccgtcaggtataatct 5809387  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 10710484 - 10710547
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    |||||| |||||||||| || ||| ||| |||||||||||| ||| |||||||||||||||||||    
T  10710484 acctctttgtctgtctatgcgcttcctt-cttcaaagctccatcaggtataatctcttccattga 10710547  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 20988005 - 20987949
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||||||||||||| |||| ||||||  ||||||||    
T  20988005 ctgtctatgctctttccttcttcaaagctccgtcatgtatcatctctatcattgaat 20987949  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 39431136 - 39431080
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| || || |||||||| ||| |||||||||||||||||||||    
T  39431136 ctgtctatgctctttccttatttaaagctccatcaggtataatctcttccattgaat 39431080  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 47622367 - 47622423
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| || |||||||||||||||  ||||||||||||||||||||    
T  47622367 ctgtctatgcactttcctttttcaaagctccgtcagatataatctcttccattgaat 47622423  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 5497958 - 5497880
Alignment:
Q  62 aaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| ||||| |||||| || ||||||| ||  |||| |||||||||||||| ||| |||||||||| || |||||||    
T  5497958 aaatctgtcctgacctctttgcctgtctatgcaatttccttcttcaaagctccatcaggtataatctcctctattgaat 5497880  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 13867138 - 13867186
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||||| ||||||||| |||||||||||  ||||||||    
T  13867138 gctctttccttcttcaaggctccgtcaggtataatctctgtcattgaat 13867186  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 32352592 - 32352656
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||||| ||||||| || ||||| ||||||||||||||  || |||||||||| || |||||    
T  32352592 acctctctgcctgtctatgcactttccttcttcaaagctccagcaggtataatctcctctattga 32352656  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 48072706 - 48072770
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||||| ||||||| || ||||| ||||||||||||||  || |||||||||| || |||||    
T  48072706 acctctctgcctgtctatgcgctttccttcttcaaagctccagcaggtataatctcctctattga 48072770  T

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Target: scaffold0472 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 4127 - 4046
Alignment:
Q  59 ctaaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||| |||||||| ||  ||||  ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||    
T  4127 ctaaagtccgtcctgactgctctacctgtctatgcactttcctttttcaaagctccgtcaggtataatctcttccattgaat 4046  T

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Target: scaffold0179 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 8398 - 8330
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||| ||||||||| ||||||| || ||||| |||||||||||||| ||| ||||||||| |||||||    
T  8398 gtcctgacctctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatctattccatt 8330  T

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Target: scaffold0179; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 13332 - 13264
Alignment:
Q  68 gtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||| ||||||||| ||||||| || ||||| |||||||||||||| ||| ||||||||| |||||||    
T  13332 gtccttacctctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatctattccatt 13264  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 105133 - 105189
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||    
T  105133 ctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaat 105189  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 182975 - 182913
Alignment:
Q  74 acctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccatt 136  Q
    ||||||||| ||||||| || ||||| |||||||||||||| | | |||||||||||||||||    
T  182975 acctctctgcctgtctatgcactttccttcttcaaagctccattaggtataatctcttccatt 182913  T

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Target: scaffold0418 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 8454 - 8398
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| || |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  8454 ctgtctatgccctttctttcttcaaagctccatcaggtataatttcttcccttgaat 8398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 14951 - 15007
Alignment:
Q  84 ctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    ||||||| |||||||| |||||||||| |||  || |||||||||||||||||||||    
T  14951 ctgtctatgctctttccttcttcaaagatccaccaggtataatctcttccattgaat 15007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 3814 - 3892
Alignment:
Q  60 taaaatccgtcctaacctctctgtctgtctacgctctttctttcttcaaagctccgtcaagtataatctcttccattga 138  Q
    ||||||| ||| | || |||||| ||||||| || |||||||||||||||||||| ||| ||||| | |||||| ||||    
T  3814 taaaatctgtcttgacttctctgcctgtctatgccctttctttcttcaaagctccatcaggtatactttcttcccttga 3892  T

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Target: scaffold0048 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 63598 - 63646
Alignment:
Q  92 gctctttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||||||| |||||||| ||| | ||| |||||||||||||||||||||    
T  63598 gctctttccttcttcaaggcttcttcaggtataatctcttccattgaat 63646  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 67918 - 67874
Alignment:
Q  96 tttctttcttcaaagctccgtcaagtataatctcttccattgaat 140  Q
    |||| ||||||||||||| || | |||||||||||||||||||||    
T  67918 tttccttcttcaaagctctgtaaggtataatctcttccattgaat 67874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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