View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1549_low_11 (Length: 242)
Name: NF1549_low_11
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_low_11 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 3802708 - 3802942
Alignment:
| Q |
8 |
gagcacagaaaacgtagacgacaaggttaagagcacttaacgctgcgatgaggtagaaaaaccaatccatgtgcccatcattcaagttattcggtatcca |
107 |
Q |
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| T |
3802708 |
gagcacagaacacgtagacgacaaggttaagagcacttaacgctgcgatgaggtagaaaaaccaatccatgtgcccatcattcaagttattcggtatcca |
3802807 |
T |
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| Q |
108 |
tcccggttcttcgcctttagcagtgattttcatcacggatttcaccatcatgctgctaacatagtttccaagagaaattgaagccatacaaagtgaactt |
207 |
Q |
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| T |
3802808 |
tcccagttcttcgcctttagtagtgattttcatcacggatttcaccatcatgctgctaacatagtttccaagagaaattgaagccatacaaagtgaactt |
3802907 |
T |
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| Q |
208 |
ccaaagctttttatgccatccggggcttgaccatt |
242 |
Q |
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| T |
3802908 |
ccaaagctttttatgccatccggggcttgaccatt |
3802942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 398076 - 397842
Alignment:
| Q |
8 |
gagcacagaaaacgtagacgacaaggttaagagcacttaacgctgcgatgaggtagaaaaaccaatccatgtgcccatcattcaagttattcggtatcca |
107 |
Q |
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| T |
398076 |
gagcacagaacacatagatgacaaggtcaagggcacttagcgctgcaatgaggtagaaaaacctgtccatgtgcccaacatttaagttattcggaatcca |
397977 |
T |
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| Q |
108 |
tcccggttcttcgcctttagcagtgattttcatcacggatttcaccatcatgctgctaacatagtttccaagagaaattgaagccatacaaagtgaactt |
207 |
Q |
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| T |
397976 |
tccaggttcctcgcctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacatagtttccaagagaaattgatgccatacaaagtgaactt |
397877 |
T |
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| Q |
208 |
ccaaagctttttatgccatccggggcttgaccatt |
242 |
Q |
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| T |
397876 |
ccaaagctttttatgccatcaggtgcttgaccatt |
397842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 2745903 - 2745848
Alignment:
| Q |
163 |
ctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttt |
218 |
Q |
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| T |
2745903 |
ctaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagctttt |
2745848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 52809497 - 52809583
Alignment:
| Q |
156 |
catgctgctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccatt |
242 |
Q |
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| T |
52809497 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccatt |
52809583 |
T |
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