View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1549_low_13 (Length: 238)

Name: NF1549_low_13
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1549_low_13
NF1549_low_13
[»] chr2 (4 HSPs)
chr2 (21-238)||(11994938-11995155)
chr2 (21-238)||(12247775-12247992)
chr2 (21-228)||(9423281-9423486)
chr2 (21-85)||(32682381-32682445)
[»] chr6 (1 HSPs)
chr6 (21-236)||(25523573-25523788)
[»] chr3 (1 HSPs)
chr3 (21-236)||(8522442-8522654)
[»] chr5 (9 HSPs)
chr5 (21-236)||(42117068-42117283)
chr5 (21-236)||(34233332-34233544)
chr5 (21-236)||(34241105-34241317)
chr5 (21-236)||(42122819-42123031)
chr5 (18-236)||(42128211-42128425)
chr5 (21-236)||(41618197-41618409)
chr5 (44-236)||(41572558-41572747)
chr5 (21-125)||(41714170-41714274)
chr5 (175-236)||(41714097-41714158)
[»] chr4 (1 HSPs)
chr4 (21-236)||(11117476-11117694)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 11995155 - 11994938
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  11995155 ctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccactggtttccatccaaatccaaatttctct 11995056  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11995055 tcactcgaaaagctgttgttgggtgaaggtggagaacgttgttcaggtccgcacttctttgacaagggaaattcacataactccaagtttcctacatatg 11994956  T
Q  221 aatcatttgaaaatgtct 238  Q
    ||||||||||||||||||    
T  11994955 aatcatttgaaaatgtct 11994938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 12247775 - 12247992
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |     
T  12247775 ctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccggtttccatccaaatccaaatttcgcg 12247874  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    || ||| |||||||||||||  ||||||||  ||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12247875 tcgctccaaaagctgttgttaagtgaaggttgagaatattgttcaggtccacacttctttgacaagggaaatccacataactccaagtttcctacatatg 12247974  T
Q  221 aatcatttgaaaatgtct 238  Q
    ||||||||||||||||||    
T  12247975 aatcatttgaaaatgtct 12247992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 9423486 - 9423281
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    |||||||||||| | ||| ||| |||| |||||| |||||| ||| | ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  9423486 ctttccaattaacagcatacaacatccaaggccttttccaagcaccattccacatccatatccaattgccactgatttccatccaaatccaaatttctct 9423387  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    ||| |  || |    ||||||||||||| || ||||  | ||| |||||| || ||| || ||||||||||||  |||||| || |||||||| ||||      
T  9423386 tcattgcaatataatttgttgggtgaagttgtagaatttcgtttaggtccacatttcatttacaagggaaatc--cataacccccagtttccttcataaa 9423289  T
Q  221 aatcattt 228  Q
    ||||||||    
T  9423288 aatcattt 9423281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 32682445 - 32682381
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaa 85  Q
    ||||||||||||||||||  | ||||| | |||||||||||||||||||||||||||||||||||    
T  32682445 ctttccaattaaaaacataaagtatccaatgcctattccaatcacaaatccacatccatatccaa 32682381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 25523788 - 25523573
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    |||||||| ||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||| |||||  | |||||||||||||||||||||||    
T  25523788 ctttccaactaaaaacatacaatatccaatgcctattccaatcagaaatccacatccatatccaattaccaccggtatccatccaaatccaaatttctct 25523689  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    |||||| ||||| | |||||||||||||||| |||| |||||||| |||| ||  |||||||||||||||||||||||||| ||||||||||| |||| |    
T  25523688 tcactccaaaagtttttgttgggtgaaggtggagaatgttgttcaagtccacatctctttgacaagggaaatccacataaccccaagtttccttcatagg 25523589  T
Q  221 aatcatttgaaaatgt 236  Q
    ||||||||| ||||||    
T  25523588 aatcatttgtaaatgt 25523573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 8522442 - 8522654
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    ||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||| |||| ||||||    
T  8522442 ctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggtttccatccaaattcaaacttctct 8522541  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    |||||  ||||   |||||||| ||||||||||||| ||||||||||||| ||| | ||||||||||| ||||||||||| |||||||||||| |||| |    
T  8522542 tcactgcaaaa---gttgttggctgaaggtgcagaatgttgttcaggtccacacatttttgacaagggtaatccacataaatccaagtttccttcataag 8522638  T
Q  221 aatcatttgaaaatgt 236  Q
    ||||||||| ||||||    
T  8522639 aatcatttgtaaatgt 8522654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 42117068 - 42117283
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    ||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  42117068 ctttccaattaaaaacataaaatatccaatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctct 42117167  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    |||||  ||||||||||||||| ||||  || |||| | ||||||||||| ||  |||||||||| ||||||||||||||  |||||||||||   || |    
T  42117168 tcactgcaaaagctgttgttggctgaaattggagaatgatgttcaggtccacaaatctttgacaacggaaatccacataaacccaagtttcctttgtagg 42117267  T
Q  221 aatcatttgaaaatgt 236  Q
    ||||||||| ||||||    
T  42117268 aatcatttggaaatgt 42117283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 34233544 - 34233332
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    ||||||||||||||||||  ||||||| ||||||||||||| |||||||||||||||||| |||||||||||   |||||||||||| ||||||||||||    
T  34233544 ctttccaattaaaaacatataatatccaaggcctattccaaacacaaatccacatccataaccaattgccactggtttccatccaaagccaaatttctct 34233445  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    |||||| ||||   |||||||| |||||||| |||| ||||||| ||||| || |||||||||||||| |||||||||||| ||||||| |||  ||| |    
T  34233444 tcactccaaaa---gttgttggctgaaggtggagaatgttgttccggtccacatttctttgacaagggtaatccacataaccccaagttccctttataag 34233348  T
Q  221 aatcatttgaaaatgt 236  Q
    ||||||||| ||||||    
T  34233347 aatcatttgtaaatgt 34233332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 34241317 - 34241105
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    ||||||||||||||||||  ||||||| ||||||||||||| |||||||||||||||||| |||||||||||   |||||||||||| ||||||||||||    
T  34241317 ctttccaattaaaaacatataatatccaaggcctattccaaacacaaatccacatccataaccaattgccactggtttccatccaaagccaaatttctct 34241218  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    |||||| ||||   |||||||| |||||||| |||| ||||||| ||||| || |||||||||||||| |||||||||||| ||||||| |||  ||| |    
T  34241217 tcactccaaaa---gttgttggctgaaggtggagaatgttgttccggtccacatttctttgacaagggtaatccacataaccccaagttccctttataag 34241121  T
Q  221 aatcatttgaaaatgt 236  Q
    ||||||||| ||||||    
T  34241120 aatcatttgtaaatgt 34241105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 42122819 - 42123031
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    ||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||||||||||| |||||   |||||||||||||| ||||||||||    
T  42122819 ctttccaattaaaaacatataatatccaatgcatattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctct 42122918  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    |||||| || |   ||| |||| |||||||| |||| ||||||||||||| || || ||||||||||| |||||||||||| |  | |||||| |||| |    
T  42122919 tcactccaaga---gttcttggctgaaggtggagaatgttgttcaggtccacatttttttgacaagggtaatccacataaccctgaatttccttcatagg 42123015  T
Q  221 aatcatttgaaaatgt 236  Q
    ||||||||| ||||||    
T  42123016 aatcatttgtaaatgt 42123031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 42128211 - 42128425
Alignment:
Q  18 agactttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttc 117  Q
    ||||||| |||||||||||||  ||||||| | |||||||||||||||||||||||||||||||||||| |||||   |||||||||||||| |||||||    
T  42128211 agacttttcaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttc 42128310  T
Q  118 tcttcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacat 217  Q
    ||||||||| || || ||||||      |  |||  |||  |||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |||    
T  42128311 tcttcactccaagagttgttgtcaaagaattgtg--gaa--ttgttcaggtccacaattctttgacaagggaaatccacataaccccaagtttccttcat 42128406  T
Q  218 atgaatcatttgaaaatgt 236  Q
    | |||||||||| ||||||    
T  42128407 aggaatcatttgtaaatgt 42128425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 41618409 - 41618197
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    |||||||||||| ||||   || |||| |||||||||||||| || | |||||||||||||||||| |||||   |||||||||||||||||||||||||    
T  41618409 ctttccaattaacaacacaaaacatccaaggcctattccaataaccattccacatccatatccaatagccactggtttccatccaaatccaaatttctct 41618310  T
Q  121 tcactcgaaaagctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatg 220  Q
    |||||| |||    ||||||||||| | | | |||| ||||||||||| | || |||||||||||||||||||| |||||  ||||||||||| ||||||    
T  41618309 tcactccaaa---ggttgttgggtggaagcggagaatgttgttcaggttcacatttctttgacaagggaaatccgcataatcccaagtttccttcatatg 41618213  T
Q  221 aatcatttgaaaatgt 236  Q
    | ||||| ||||||||    
T  41618212 agtcattggaaaatgt 41618197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 236
Target Start/End: Complemental strand, 41572747 - 41572558
Alignment:
Q  44 atccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctcttcactcgaaaagctgttgttggg 143  Q
    |||| |||||||||||||| || | |||||||||||||||||| |||||   ||||||||||||||||||||||||||||||| |||    |||||||||    
T  41572747 atccaaggcctattccaataaccattccacatccatatccaatagccactggtttccatccaaatccaaatttctcttcactccaaa---ggttgttggg 41572651  T
Q  144 tgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacatatgaatcatttgaaaatgt 236  Q
    || | | | |||| ||||||||||| | || |||||||||||||||||||| |||||  ||||||||||| ||||||| ||||| ||||||||    
T  41572650 tggaagcggagaatgttgttcaggttcacatttctttgacaagggaaatccgcataatcccaagtttccttcatatgagtcattggaaaatgt 41572558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 41714274 - 41714170
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    |||||| || ||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  41714274 ctttccgatcaaaaacatgtaatacccaatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctct 41714175  T
Q  121 tcact 125  Q
     ||||    
T  41714174 gcact 41714170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 41714158 - 41714097
Alignment:
Q  175 ttctttgacaagggaaatccacataactccaagtttcctacatatgaatcatttgaaaatgt 236  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||    
T  41714158 ttcttggacaagggaaatccacataaccccaagtttccttcataggaatcatttgtaaatgt 41714097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 11117476 - 11117694
Alignment:
Q  21 ctttccaattaaaaacatgcaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccattttccatccaaatccaaatttctct 120  Q
    ||||||||||||||||||  ||||||| | || |||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||    
T  11117476 ctttccaattaaaaacatataatatccaatgcttattccaatcacaaatccacatgcatatccaattgccactgctttccatccaaatccaaatttctct 11117575  T
Q  121 tcactcgaaaag---ctgttgttgggtgaaggtgcagaacgttgttcaggtccgcacttctttgacaagggaaatccacataactccaagtttcctacat 217  Q
    ||| || || ||     |||||||| |||||||| |||| ||||||||||||| || |||||||||||||| |||||||||||| |  | |||||| |||    
T  11117576 tcattccaagaggaagagttgttggctgaaggtggagaatgttgttcaggtccacatttctttgacaagggtaatccacataaccctgaatttccttcat 11117675  T
Q  218 atgaatcatttgaaaatgt 236  Q
    | |||||||||| ||||||    
T  11117676 aggaatcatttgtaaatgt 11117694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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