View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1549_low_14 (Length: 234)
Name: NF1549_low_14
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_low_14 |
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| [»] scaffold0053 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 41445761 - 41445966
Alignment:
| Q |
15 |
ttatgtgttagaaaagttactcgagattgatgttgaagttctggaaaatcgtggcgcgatttggtgatgcttggagcatgttttggttcgttaaaaaacg |
114 |
Q |
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| T |
41445761 |
ttatgtgttagaaaagttactcgagattgatgttgaagttcaggaaaatcgtggcgcgatttggtgatgcttggagcatgttttggttcgttaaaaaacg |
41445860 |
T |
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| Q |
115 |
tggcacgattttagagaaatcgtggcgcgatttgattgatgacagctttgtactgtgtacaaaatagtgaaccgtggcgcaatccgagcaaattgtggag |
214 |
Q |
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| T |
41445861 |
tggcacgattttagagaaatcgtggcgcgatttgattgatgacagctttgtactgtgtacaaaatagtgaaccgtggcgcaatccgagcaaattgtggag |
41445960 |
T |
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| Q |
215 |
ggattt |
220 |
Q |
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||||| |
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| T |
41445961 |
tgattt |
41445966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 24709 - 24833
Alignment:
| Q |
61 |
aatcgtggcgcgatttggtgatgcttggagcatgttttggttcgttaaaaaacgtggcacgattttagagaaatcgtggcgcgatttgattgatgacagc |
160 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||| | | ||| |
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| T |
24709 |
aatcgtggcacgatttggtgatgctgggagcatgttttggttcgtaaaaaacggtggcacgattttgaagaaatcgtggcgcaatttgactaagtacaat |
24808 |
T |
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| Q |
161 |
tttgtactgtgtacaaaatagtgaa |
185 |
Q |
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| T |
24809 |
tttgtactgtctacaaaacagtgaa |
24833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 22553008 - 22552965
Alignment:
| Q |
59 |
aaaatcgtggcgcgatttggtgatgcttggagcatgttttggtt |
102 |
Q |
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| T |
22553008 |
aaaatcgtggcacgatttggtgatgctgggagcatgttttggtt |
22552965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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