View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1549_low_7 (Length: 319)
Name: NF1549_low_7
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 144 - 305
Target Start/End: Original strand, 7885284 - 7885452
Alignment:
| Q |
144 |
catgttctctactctttttgtgtgtgagtttcgccactagattctttaacattaaaaaatcttaataaatgcaaaaatggattaattgc-------attg |
236 |
Q |
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| T |
7885284 |
catgttctctacactttgtgtgtgtgagtttcgccactagattctttaacattaaaaaatcttaataaatgaaaaaatggattgattgcattatatattg |
7885383 |
T |
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| Q |
237 |
caggtgggattgttgaatgtggatggttactataactcattgctgcagatgaaggtttcatatcacagg |
305 |
Q |
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| T |
7885384 |
caggtgggattgttgaatgtggatggttactataactcattgctgtagatgaaggtttcataacacagg |
7885452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 7885126 - 7885256
Alignment:
| Q |
19 |
ggaagaactattcgaagtgatcacctcacctgggctcaactcggaattcttgataaacctgtaagcatatactctcaatagaagtgtaatggaatgttta |
118 |
Q |
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| T |
7885126 |
ggaagaactattagaagtgatcacctcacctgggctcaactaggaattcatgataaacctgtaagcatatactctcaatagaagtgtaatggaatgttta |
7885225 |
T |
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| Q |
119 |
aaaagtatcttaaactaacatttgacatgtt |
149 |
Q |
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| T |
7885226 |
aaaagtatcttaaagtaacatttgacatgtt |
7885256 |
T |
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