View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1549_low_8 (Length: 299)
Name: NF1549_low_8
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 5736769 - 5737028
Alignment:
| Q |
13 |
atcatcacattgaatttgaagatattagacactccatctatctgttgtagaacatcaatttttctcctactcacacttgacatgccaacatggtagatca |
112 |
Q |
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| T |
5736769 |
atcatcacattgaatttgaagatattagatactccatctatctgttgtaaaacatcaatttttctcctactcacacttgacatgccaacatggtagatca |
5736868 |
T |
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| Q |
113 |
taaaaagaatgaagaaacaaacaaatattataaatatattttcaagtgttctttgactatggagttctaatccaaaattaagtgattaactattcaatta |
212 |
Q |
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| T |
5736869 |
taaaaagaatgaagaaacaaacaaatattataaatatattttcaagtgttctttgactatggagttctgatccaaaattaagtgattaactattcaatta |
5736968 |
T |
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| Q |
213 |
aaaacaaataatacaaaataatacgagttaagatcatattaataataatcattgattatactttgcttat |
282 |
Q |
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| T |
5736969 |
aaaac----------aaataatacgagttaagatgatattaataataatcattgattatactttacttat |
5737028 |
T |
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