View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1549_low_9 (Length: 249)
Name: NF1549_low_9
Description: NF1549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1549_low_9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 41445419 - 41445580
Alignment:
| Q |
88 |
cattcccgcgtgaaggcaagacaatccgttacctaatactaatcccatctttctgttagttgcttctccacaatactaaaaatgctgttacccttatcct |
187 |
Q |
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| T |
41445419 |
cattcccgcgtgaagacaagacaatccgttacctaataccaatcccatctttctgttagttgcttctccacaatactaaaaatgttgttacccttatcct |
41445518 |
T |
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| Q |
188 |
tcatgcatgcatatttcaccttttaactccttataattttgcttcttattttcatttattca |
249 |
Q |
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| T |
41445519 |
tcatgcatgcatattgcaccttttaactccttataattttgcttcttattttcatttattca |
41445580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 41453573 - 41453687
Alignment:
| Q |
139 |
tctgttagttgcttctccacaat----actaaaaatgctgttacccttatccttcatgcatgcatatttcaccttttaactccttataattttgcttctt |
234 |
Q |
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| T |
41453573 |
tctgttagttgcttcttcacaaactgcactaaaaatgttcttacccttatccttcatgcatgcatatttcaccttttacctcattataactttacttctt |
41453672 |
T |
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| Q |
235 |
attttcatttattca |
249 |
Q |
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| T |
41453673 |
attttcatttattca |
41453687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 41453436 - 41453494
Alignment:
| Q |
42 |
acaaaattagtgggaaaaggaggaaaatgttagaagtccacaacgtcattcccgcgtgaa |
101 |
Q |
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| T |
41453436 |
acaaagttagtgggaaacggagcaaaatgtt-gaagtccacaaagtcattcccgcgtgaa |
41453494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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