View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15500_high_7 (Length: 277)
Name: NF15500_high_7
Description: NF15500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15500_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 896628 - 896381
Alignment:
| Q |
18 |
aaatgcaccatcatctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaa |
117 |
Q |
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| T |
896628 |
aaatgcaccatcatctcatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaa |
896529 |
T |
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| Q |
118 |
gtataatactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagagacgggtcttcaaatctcagtatttcaaactaaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
896528 |
gtataatactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagagacgggtcttcaaatctcagtatttcaaactaaacc |
896429 |
T |
|
| Q |
218 |
aaacatcctaaaaccctgactcatcattataccgtttcatagaataat |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
896428 |
aaacatcctaaaaccctgactcatcattataccgtttcatagaataat |
896381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 1182454 - 1182299
Alignment:
| Q |
25 |
ccatcatctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtataat |
124 |
Q |
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|||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1182454 |
ccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtataat |
1182355 |
T |
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| Q |
125 |
actcattagagaacacttatcactttatctcattttcttaaccaaatactcattag |
180 |
Q |
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| T |
1182354 |
acttattagagagcacttatcactttatcacattttcttaaccacatattcattag |
1182299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 897183 - 897125
Alignment:
| Q |
29 |
catctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaat |
88 |
Q |
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| T |
897183 |
catctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaat |
897125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 1237376 - 1237511
Alignment:
| Q |
53 |
actcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtata--------atactcattagagaacacttat |
144 |
Q |
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|||||||||||||||||||||||||||||| ||||| | | || ||||| |||||||| |||||||||| |||||||||||||| || ||| |
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| T |
1237376 |
actcaatatgcaataacaatatcctaagtactcaatatgtcatacatcaacaaatctcaacacaagtataataatcatatactcattagagagaacctat |
1237475 |
T |
|
| Q |
145 |
cactttatctcattttcttaaccaaatactcattagag |
182 |
Q |
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||| |||| |||||||||||||| ||||||||||||| |
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| T |
1237476 |
cac--tatcacattttcttaaccacatactcattagag |
1237511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 1193303 - 1193243
Alignment:
| Q |
123 |
atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga |
183 |
Q |
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||||||| ||||| ||||||||| || ||| |||||||||||||| |||||||||||||| |
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| T |
1193303 |
atactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagaga |
1193243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 793867 - 793908
Alignment:
| Q |
138 |
cacttatcactttatctcattttcttaaccaaatactcatta |
179 |
Q |
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|||||||||||||||| |||||||||||||| ||| |||||| |
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| T |
793867 |
cacttatcactttatcacattttcttaaccacatattcatta |
793908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 10203891 - 10203831
Alignment:
| Q |
123 |
atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga |
183 |
Q |
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||||||| |||||| |||||||||||| ||| |||||| ||||||| |||||||||||||| |
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| T |
10203891 |
atactcactagagagcacttatcacttcatcacatttttttaaccacatactcattagaga |
10203831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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