View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15500_low_2 (Length: 458)
Name: NF15500_low_2
Description: NF15500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15500_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 44892240 - 44891818
Alignment:
| Q |
10 |
attattctctgagtcgaaatctctctgaaagctctcaaagctcccttctctttcccgaatatccgggtttattattgagaccatatgccactaaagtaaa |
109 |
Q |
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| T |
44892240 |
attattctctgagtcggaatctctctgaaagctctcaaagctcccttctctttcccgaatatccgggtttattattgagaccatatgccactaaa----- |
44892146 |
T |
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| Q |
110 |
ctagctttcttttagtagttgcacgaacaatgaattttccataaccaagatgtacatcatgtaccctgaaacaataagtaactctttttctattcgtttt |
209 |
Q |
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| T |
44892145 |
ctagctttcttttagtagttgcacgaacaatgaattttccataaccaagatgtacatcatgtaccctgaaacaataagtaactctttttctattcgtttt |
44892046 |
T |
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| Q |
210 |
gtttattcatcattacttctttcttggtataggggacaccagaagacggctgtgaaagctgcaaaccttaatacttctgttgagattgcaaaaaacacat |
309 |
Q |
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| T |
44892045 |
gtttatttatcattacttctttcttggtataggggacaccagaagacggctgtgaaagctgcaaaccttaatacttctgttgagattgcaaaaaacacat |
44891946 |
T |
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| Q |
310 |
tatttccagtataagtttatggagatcgagaaaaggaataaacaaattcggatacaagcgtgatgtttcaaataagtttttgctcgaaattgatcaacca |
409 |
Q |
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| T |
44891945 |
tatttccagtataagtttatgga----gagaaaaggaataaacaaattcggatacaagcgtgatggttcaaataagtttttgctcgaaattgatcaacca |
44891850 |
T |
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| Q |
410 |
aactgcataagttcgtattttgcccaaatgtc |
441 |
Q |
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| T |
44891849 |
aactgcttaagttcgtattttgcccaaatgtc |
44891818 |
T |
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