View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15500_low_3 (Length: 440)
Name: NF15500_low_3
Description: NF15500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15500_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 27430039 - 27430461
Alignment:
| Q |
1 |
acatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagag |
100 |
Q |
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| T |
27430039 |
acatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagag |
27430138 |
T |
|
| Q |
101 |
gtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaagatgagagaaaa |
200 |
Q |
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| T |
27430139 |
gtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaagatgagagaaaa |
27430238 |
T |
|
| Q |
201 |
gggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctcagggctttgca |
300 |
Q |
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| T |
27430239 |
gggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctcagagctttgca |
27430338 |
T |
|
| Q |
301 |
agattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttgatcatg |
400 |
Q |
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| T |
27430339 |
agattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttgatcatg |
27430438 |
T |
|
| Q |
401 |
tttgtgagtgcacctgtaatagt |
423 |
Q |
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| T |
27430439 |
tttgtgagtgcacctgtaatagt |
27430461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 191 - 423
Target Start/End: Original strand, 27447476 - 27447708
Alignment:
| Q |
191 |
tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctca |
290 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| |||| |||| | |||||||||| |
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| T |
27447476 |
tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctca |
27447575 |
T |
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| Q |
291 |
gggctttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaac |
390 |
Q |
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||| |||||||||||||||||||||||||| | | |||||||| ||| |||||||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
27447576 |
gggttttgcaagattctacaagtatgatggcctgaataggttgtcctgtgaagaggtggatcctcttgaattctttggacttgttttattgctttgcaac |
27447675 |
T |
|
| Q |
391 |
cttgatcatgtttgtgagtgcacctgtaatagt |
423 |
Q |
| |
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| T |
27447676 |
cttgatcatttttgtgagtgcatctgtaatagt |
27447708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 27447316 - 27447478
Alignment:
| Q |
1 |
acatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagag |
100 |
Q |
| |
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|||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27447316 |
acatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagtgagtccagagag |
27447415 |
T |
|
| Q |
101 |
gtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga |
163 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
27447416 |
gtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga |
27447478 |
T |
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