View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15500_low_4 (Length: 399)
Name: NF15500_low_4
Description: NF15500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15500_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 26 - 381
Target Start/End: Complemental strand, 44544644 - 44544289
Alignment:
| Q |
26 |
tatcctgattataatggtcatttcctactgtcgccagattcttgcattttaatttcaaaaacaataatggtcatttcatcaaaatattttaaaatcatca |
125 |
Q |
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| T |
44544644 |
tatcctgattataatggtcatttcctactgtcgccagattcttgcattttaatttcaaaaacaataatggtcatttcataaaaatattttaaaatcatca |
44544545 |
T |
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| Q |
126 |
taaatatatttagttaattagacatgaacaaatcttttggtgaataattaaataaatagacannnnnnnnaaggggtagtcaacatttgtttgtattgta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44544544 |
taaatatatttagttaattagacatgaacaaatcttttggtgaataattaaataaatagacattttttttaaggggtagtcaacatttgtttgtattgta |
44544445 |
T |
|
| Q |
226 |
gtcaactcaacacatccgtacgnnnnnnnngtatataatataatacaattcagaacaagtacacttaataacattcccaatgacctttgttttctagttc |
325 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44544444 |
gtcaactcaacacatccgtacgttttttttgtatataatataatacaattcagaacaagtacacttaataaccttcccaatgacctttgttttctagttc |
44544345 |
T |
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| Q |
326 |
aacctcccccaactatatacatatttcttcctcctggccagggtgttatatagatt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44544344 |
aacctcccccaactatatacatatttcttcctcctggccagggtgttatatagatt |
44544289 |
T |
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