View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15500_low_5 (Length: 395)
Name: NF15500_low_5
Description: NF15500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15500_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 21122989 - 21122626
Alignment:
| Q |
19 |
acaccatctaatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21122989 |
acaccatctaatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcatct |
21122890 |
T |
|
| Q |
119 |
tttgacaattcattaaattacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatccctgtatcctt |
218 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21122889 |
tgtgacaattcattaaaatacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtataagcgaatccctgtatcctt |
21122790 |
T |
|
| Q |
219 |
caaatgaaactctctccatagattgtcaactattataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21122789 |
caaatgaaactctctccatagattgtcaactattataagagttctcttcatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttct |
21122690 |
T |
|
| Q |
319 |
tcccccaatttaaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttc |
382 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21122689 |
tcccccaatttcaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttc |
21122626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 41 - 381
Target Start/End: Complemental strand, 21115540 - 21115200
Alignment:
| Q |
41 |
attcgtcatcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattaca |
140 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| | |||| | |||| |
|
|
| T |
21115540 |
attcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccccaaatgaatcttcttttgacagtccattgatgtaca |
21115441 |
T |
|
| Q |
141 |
aacattctcaatacgtgtggttacaaggattttcaatgcac-ctctattatcattgtttaagcgaatccctgtatccttcaaatgaaactctctccatag |
239 |
Q |
| |
|
|||| |||| |||| ||||||| |||| ||| ||| ||| ||| |||||| || | |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
21115440 |
gacatgctcattacgagtggttatcaggaccttccatgtgtgctcg-ttaacattgtctacgagaatccctatatttatcaaatgaaactctctccatag |
21115342 |
T |
|
| Q |
240 |
attgtcaactattataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaatttaaagtttaac |
339 |
Q |
| |
|
|| ||| |||||||||||| ||| ||| ||| |||||||| |||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
21115341 |
atcgtccactattataagaattcgcttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaac |
21115242 |
T |
|
| Q |
340 |
atatctgcaatttgtccttgaatgctcctaatgtttggagtt |
381 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||| ||||||||| |
|
|
| T |
21115241 |
atatctgcaagttttccctgaatgcctctaatatttggagtt |
21115200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 363
Target Start/End: Original strand, 21715439 - 21715745
Alignment:
| Q |
57 |
tgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgt |
156 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||| || |||||| ||| ||||| ||||||||||| | ||||||| | || || | || | |||| |
|
|
| T |
21715439 |
tgcatgcttttggaacaaagtccaggattcatctttagataagagcgccaggtgaatattcttttgacagtccattaaagtgcatacttgctgattacga |
21715538 |
T |
|
| Q |
157 |
gtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatccctgtatccttcaaatgaaactctctccatagattgtcaactattataa |
256 |
Q |
| |
|
|||||||||||||||||| |||| || | ||| |||||| || | |||||||| ||| | |||||| ||||||| |||||| || |||| ||| | || |
|
|
| T |
21715539 |
gtggttacaaggattttccatgcgcccttgttaacattgtctatgtgaatccctatattcatcaaattaaactctttccataaatcatcaattataacaa |
21715638 |
T |
|
| Q |
257 |
gagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaatttaaagtttaacatatctgcaatttgtcc |
356 |
Q |
| |
|
|| ||| || ||||||| |||| |||||| | |||||||||||||| ||||| ||||||||| | ||| ||||||||||| ||||| |||| ||| |
|
|
| T |
21715639 |
gaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttccttgagtttcaagtttaacatgtctgccatttttcc |
21715738 |
T |
|
| Q |
357 |
ttgaatg |
363 |
Q |
| |
|
||||||| |
|
|
| T |
21715739 |
ttgaatg |
21715745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 21622576 - 21622463
Alignment:
| Q |
57 |
tgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgt |
156 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||| || || ||| | | |||||| ||||||||||| | |||| || | || || | || | |||| |
|
|
| T |
21622576 |
tgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacga |
21622477 |
T |
|
| Q |
157 |
gtggttacaaggat |
170 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21622476 |
gtggttacaaggat |
21622463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 21644290 - 21644177
Alignment:
| Q |
57 |
tgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgt |
156 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||| || || ||| | | |||||| ||||||||||| | |||| || | || || | || | |||| |
|
|
| T |
21644290 |
tgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacga |
21644191 |
T |
|
| Q |
157 |
gtggttacaaggat |
170 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21644190 |
gtggttacaaggat |
21644177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 362
Target Start/End: Original strand, 23010392 - 23010646
Alignment:
| Q |
108 |
atgaatcttcttttgacaattcattaaattacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatc |
207 |
Q |
| |
|
|||||||||||||||||| | ||| | || ||| |||| | | |||| |||||| ||||||| ||| ||||||| | |||||||||| |||||||||| |
|
|
| T |
23010392 |
atgaatcttcttttgacagtgcatcagatcacatacatgttgattacgagtggttgcaaggatcttccatgcacccttgttatcattgtctaagcgaatc |
23010491 |
T |
|
| Q |
208 |
cctgtatccttcaaatgaaactctctccatagattgtcaactattataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccat |
307 |
Q |
| |
|
||| ||| ||||||| |||||||||||||| || || ||||||| ||| | | ||| ||||||| |||| |||||| | ||||||||||||||| | |
|
|
| T |
23010492 |
cctacatcgttcaaatcaaactctctccataaatcatctactattacgagaatccgcttcttttctttcaaactcaaccacaaacgttgtgctcttccct |
23010591 |
T |
|
| Q |
308 |
cttcactttcttcccccaatttaaagtttaacatatctgcaatttgtccttgaat |
362 |
Q |
| |
|
| |||||||||||| ||||||| | ||| || | ||| || |||| ||||||||| |
|
|
| T |
23010592 |
catcactttcttcctccaatttcatgttcaaaacatcagctatttttccttgaat |
23010646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University