View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15500_low_8 (Length: 207)
Name: NF15500_low_8
Description: NF15500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15500_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 12418920 - 12418837
Alignment:
| Q |
106 |
tcacatcagttcaaagtcataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattac |
189 |
Q |
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| T |
12418920 |
tcacatcagttcaaagaaataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattac |
12418837 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 12419369 - 12419278
Alignment:
| Q |
16 |
aacaataattgtggaagaaaacttgggccaaagaatttgcttggtgactaagacaaaagcacacnnnnnnnntctttaatgtcactcacatc |
107 |
Q |
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| T |
12419369 |
aacaataattgtggaagaaaacttgggccaaagaatttgcttggtgactaagacaaaagcacacaaaaaaaatctttaatgtcactcacatc |
12419278 |
T |
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